Gene PA14_53940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_53940 
SymbolprpB 
ID4381663 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp4782285 
End bp4783181 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content67% 
IMG OID639326927 
Product2-methylisocitrate lyase 
Protein accessionYP_792486 
Protein GI116048714 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2513] PEP phosphonomutase and related enzymes 
TIGRFAM ID[TIGR02317] methylisocitrate lyase 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGA CGTCCCTTAC CCCCGGCCAG CGCTTCCGCG AAGCCGTGGC CACCGAGCAC 
CCGCTGCAGG TGGTCGGCAC CATCAACGCC AACCACGCCC TGCTGGCCAA GCGCGCCGGC
TTCAAGGCCA TCTACCTGTC CGGCGGCGGC GTCGCTGCCG GTTCCCTGGG CCTGCCGGAC
CTGGGCATCA GCGGCCTCGA CGACGTGCTC ACCGACGTGC GCCGGATCAC CGACGTCTGC
GACCTGCCGC TGCTGGTGGA CGTCGACACC GGCTTCGGCT CCTCGGCGTT CAACGTCGCC
CGCACGGTGA AGTCGATGAT CAAGTTCGGC GCCGCCGCGA TGCATATCGA GGACCAGGTC
GGCGCCAAGC GCTGCGGCCA TCGGCCGAAC AAGGAGATCG TCTCGCAGCA GGAGATGGTC
GACCGCATCA AGGCCGCCGT CGATGCCCGC AGCGACGACT CCTTCGTGAT CATGGCGCGC
ACCGACGCGC TGGCCGTGGA AGGCCTGCAG GCCGCCATCG ACCGCGCCTG CGCCTGCGTC
GAGGCCGGCG CCGATATGAT CTTCCCGGAA GCCATGACCG AACTGGCCAT GTACAAGGAG
TTCGCCGCCG CGGTGAAGGT GCCGGTGCTG GCCAACATCA CCGAGTTCGG CGCCACCCCG
CTGTTCACCA CCGACGAACT GGCCTCCGCC GACGTGTCCC TGGTGCTCTA CCCGCTGTCG
GCCTTCCGCG CCATGAACAA GGCGGCGGAG AACGTCTACA CCGCGATCCG TCGCGACGGC
ACCCAGAAGA ACGTGATCGA TACCATGCAG ACCCGCATGG AGCTGTACGA TCGCATCGAT
TACCACAGCT TCGAGCAGAA GCTCGACGCG CTCTTCGCGC AGAAGAAGAA CGCCTGA
 
Protein sequence
MSQTSLTPGQ RFREAVATEH PLQVVGTINA NHALLAKRAG FKAIYLSGGG VAAGSLGLPD 
LGISGLDDVL TDVRRITDVC DLPLLVDVDT GFGSSAFNVA RTVKSMIKFG AAAMHIEDQV
GAKRCGHRPN KEIVSQQEMV DRIKAAVDAR SDDSFVIMAR TDALAVEGLQ AAIDRACACV
EAGADMIFPE AMTELAMYKE FAAAVKVPVL ANITEFGATP LFTTDELASA DVSLVLYPLS
AFRAMNKAAE NVYTAIRRDG TQKNVIDTMQ TRMELYDRID YHSFEQKLDA LFAQKKNA