| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_53250 |
|---|
| Symbol | cpbD |
|---|
| ID | 4385310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 4719782 |
|---|
| End bp | 4720951 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639326866 |
|---|
| Product | chitin-binding protein CbpD precursor |
|---|
| Protein accession | YP_792425 |
|---|
| Protein GI | 116048775 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3397] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.889986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACT ACTCAGCCAC CCTGGCACTC CTGCCACTCA CCCTCGCCCT GTTCCTGCCC
CAGGCAGCCC ATGCCCACGG CTCGATGGAA ACGCCGCCCA GCCGGGTCTA CGGCTGCTTC
CTCGAAGGTC CGGAGAATCC CAAGTCGGCC GCCTGCAAGG CCGCCGTCGC CGCCGGCGGC
ACCCAGGCGC TGTACGACTG GAATGGCGTC AACCAGGGCA ACGCCAACGG CAACCACCAG
GCGGTGGTCC CCGACGGCCA GCTCTGCGGC GCCGGCAAGG CACTGTTCAA GGGCCTGAAC
CTGGCTCGCA GCGACTGGCC GAGCACCGCC ATCGCCCCGG ACGCCAGCGG CAACTTCCAG
TTCGTCTACA AGGCCAGCGC GCCGCACGCG ACCCGCTACT TCGACTTCTA CATCACCAAG
GACGGCTACA ACCCCGAGAA GCCGCTGGCC TGGAGCGACC TGGAACCCGC GCCGTTCTGC
TCGATCACCA GCGTCAAGCT GGAGAACGGC ACCTACCGGA TGAACTGCCC GCTGCCCCAG
GGCAAGACCG GCAAGCATGT GATCTACAAC GTCTGGCAGC GTTCGGACAG CCCGGAAGCC
TTCTACGCCT GCATCGACGT GAGCTTCAGC GGCGCCGTCG CCAACCCCTG GCAAGCGCTG
GGCAACCTGC GCGCGCAGCA GGACCTGCCG GCCGGTGCCA CCGTCACCCT GCGCCTGTTC
GATGCCCAGG GCCGCGACGC CCAGCGTCAC AGCCTGACCC TGGCCCAGGG CAACAACGGT
GCCAAGCAAT GGCCGCTGGC GCTGGCGCAG AAGGTCAACC AGGACTCCAC CCTGGTCAAC
ATCGGCGTGC TGGATGCCTA CGGGGCGGTC AGCCCGGTGG CCAGCTCGCA GGACAACCAG
GTCTACGTGC GCCAGGCCGG CTACCGCTTC CAGGTCGACA TTGAACTGCC GGTCGAGGGC
GGCGGCGAGC AACCGGGCGG CGACGGCAAG GTCGACTTCG ACTATCCGCA AGGCCTGCAG
CAATACGACG CCGGGACCGT AGTGCGCGGT GCCGATGGCA AGCGCTACCA GTGCAAGCCC
TACCCGAACT CCGGCTGGTG CAAGGGCTGG GACCTCTACT ACGCCCCGGG CAAGGGCATG
GCCTGGCAGG ACGCCTGGAC CCTGCTGTAA
|
|---|
| Protein sequence | MKHYSATLAL LPLTLALFLP QAAHAHGSME TPPSRVYGCF LEGPENPKSA ACKAAVAAGG
TQALYDWNGV NQGNANGNHQ AVVPDGQLCG AGKALFKGLN LARSDWPSTA IAPDASGNFQ
FVYKASAPHA TRYFDFYITK DGYNPEKPLA WSDLEPAPFC SITSVKLENG TYRMNCPLPQ
GKTGKHVIYN VWQRSDSPEA FYACIDVSFS GAVANPWQAL GNLRAQQDLP AGATVTLRLF
DAQGRDAQRH SLTLAQGNNG AKQWPLALAQ KVNQDSTLVN IGVLDAYGAV SPVASSQDNQ
VYVRQAGYRF QVDIELPVEG GGEQPGGDGK VDFDYPQGLQ QYDAGTVVRG ADGKRYQCKP
YPNSGWCKGW DLYYAPGKGM AWQDAWTLL
|
|---|
| |