| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_52840 |
|---|
| Symbol | |
|---|
| ID | 4385588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 4684070 |
|---|
| End bp | 4685065 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639326833 |
|---|
| Product | C4-dicarboxylate-binding periplasmic protein |
|---|
| Protein accession | YP_792392 |
|---|
| Protein GI | 116048808 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.0996275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA CGATGGTACG GGCGCTGTTG TGCGCCCTGG CGATCGGTGG CTCCTGCCTG
GCGAATGCCG CGCAGCCTAT CGTCATCAAG TTTTCCCACG TGGTCGCGGA AAACACGCCC
AAGGGCCAGG GCGCGCTGCT GTTCAAGAAG CTCGTCGAAC AGCGCCTGGG CGGCCGGGTC
GAGGTGGACG TCTATCCCAA CTCGTCGCTG TTCGGCGATG GCAAGGAAAT GGAGGCGCTG
CTGCTGGGCG ACGTGCAGAT GCTGGCGCCG TCCCTGGCCA AGTTCGAGCA GTACACGCGC
AAGGTGCAGA TCTTCGACCT GCCGTTCCTC TTCGACGACA TCCAGGCGGT CGACCGCTTC
CAGCGCAGCC CGCAGGGGCG CGCCCTGCTG ACCAGCATGC AGGGCAAGGG CATCCTCGGC
CTGGCCTACT GGCACAACGG GATGAAGCAG CTCTCCGCCA ATCGCCCGTT GCTGGAGCCG
GAAGACGCGC GCGGGCTGAA ATTCCGCGTG CAGGCGTCCG ACGTGCTCAA CGAGCAGTTC
CGCCAGCTCC GCGCGATCTC CCGGAAGATG TCCTTCGCCG AGGTCTACCA GGGCTTGCAG
ACCGGCGTGG TGAATGGCAC CGAGAACACC TGGTCGAACT ACGAGAGCCA GAAGGTCAAC
GAGGTGCAGA AGTATTTCAC CGAGTCCAAC CACGGCCTGG TGGACTACAT GGTGATCACC
AACGCGAAGT TCTGGAACGG CCTCCCGGCG GACATCCGCG AAGCGCTGCA GCGGATCATG
GACGAGGTCA CCGTGCAGGT GAACATCGAA GCCGAGCGCC TCAACCGCGA CGCCCGCCAG
CGCATCCTCG CCAGTGGCGT CAGCGAGATC CATACCCTGA GCCCGCAGCA GCGCGCCGAC
TGGCGCCAGG CGATGCAGCC GGTATGGCAG AAATTCCGCG GCAATGTCGG CGCTGACCTG
CTCCAGGCCG CCGAAGCTTC CAACCGTCCC GATTGA
|
|---|
| Protein sequence | MFKTMVRALL CALAIGGSCL ANAAQPIVIK FSHVVAENTP KGQGALLFKK LVEQRLGGRV
EVDVYPNSSL FGDGKEMEAL LLGDVQMLAP SLAKFEQYTR KVQIFDLPFL FDDIQAVDRF
QRSPQGRALL TSMQGKGILG LAYWHNGMKQ LSANRPLLEP EDARGLKFRV QASDVLNEQF
RQLRAISRKM SFAEVYQGLQ TGVVNGTENT WSNYESQKVN EVQKYFTESN HGLVDYMVIT
NAKFWNGLPA DIREALQRIM DEVTVQVNIE AERLNRDARQ RILASGVSEI HTLSPQQRAD
WRQAMQPVWQ KFRGNVGADL LQAAEASNRP D
|
|---|
| |