| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_52810 |
|---|
| Symbol | |
|---|
| ID | 4385590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 4682103 |
|---|
| End bp | 4683386 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639326831 |
|---|
| Product | C4-dicarboxylate transporter |
|---|
| Protein accession | YP_792390 |
|---|
| Protein GI | 116048810 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGC TGATCCTGTT CCTGCTGCTG TTCCTGTTCA TGTTCATCGG CGTGCCCATC
GCCATCTCCC TGGGGCTGTC CGGCGCCCTG ACGATCCTGC TGTTCAGCCC GGATTCGGTG
CGCTCGCTGG CGATCAAGCT GTTCGAGACC TCCGAGGCCT ACACCCTGCT GGCGATCCCG
TTCTTCCTGC TCTCCGGCGC GTTCATGACC ACCGGTGGCG TGGCGCGGCG CCTGATCGAC
TTCGCCAATG CCTGCGTCGG GCATATCCGC GGCGGCCTGG CGATCGCTGC GGTGCTCGCC
TGCATGCTGT TCGCCGCGCT GTCCGGTTCG TCGCCGGCGA CGGTGGCGGC GGTCGGCTCG
ATCGCCGTGG CCGGCATGGT CCGCTCCGGC TATCCGCGCG CCTTCGGCGC GGGGATCATC
TGCAACGCCG GGACCCTGGG TATCCTCATC CCGCCATCGA TCGTGATGGT GGTCTACGCC
GCCGCCACCG AGACCTCGGT GGGCAAGCTG TTCGTCGCCG GGGTGGTTCC GGGGCTGCTG
CTCGGGGTGA TCCTGATGGT GGTGATCTAC ATCGTCGCAC GGGTCAAGAA GCTGCCGGCG
CAGCCGCGCG CCAGCTTCCG CGAGTGGCTG GCCGCCGCAC GCCGTGCAGG CTGGGGCCTG
TTGTTGCTGG TGATCATCCT CGGCGGCATC TATTCCGGGC TGTTCACCCC CACCGAGGCG
GCGGCGGTGG CGGCAGTGTA CTCGGCCTTC GTCGCGCTGT TCGTGTACAA GGACATGCGT
CTGCGCGACT GTCCCAAGGT GCTGCTGGAG TCGGGGCGGC TGAGCATCAT GCTGATGTTC
ATCATCGCCA ACGCCATGCT CTTCGCCCAC GTGTTGACCA CCGAGCAGAT CCCCCAGCAG
ATCACCGAAT GGGTGGTGCA GGAAGGCCTG ACCCCGATCG GCTTCCTGCT GATGGTCAAC
GTGGTGCTGC TGGTCGCCGG CAGCTTCATG GAGCCCTCGG CGATCGTGCT GATCCTGGCG
CCGATCTTCT TCCCCATCGC CATGAAGCTG GGCATCGACC CGATCCACCT GGGCATCGTC
ATGGTGGTGA ACATGGAGAT CGGCCTGGTA CACCCGCCGG TCGGCCTCAA CCTGTTCGTC
ACTTCGGCGG TCACTGGCAT GCCGCTGGGG GCGACCATCC GCGCGGCGCT GCCGTGGCTG
ATGATCCTGC TGCTGTTCCT GATCCTGGTG ACCTACGTGC CGTTGATCTC GCTGTGGCTG
CCGGGCCTGC TGGGCATGAG TTGA
|
|---|
| Protein sequence | MTVLILFLLL FLFMFIGVPI AISLGLSGAL TILLFSPDSV RSLAIKLFET SEAYTLLAIP
FFLLSGAFMT TGGVARRLID FANACVGHIR GGLAIAAVLA CMLFAALSGS SPATVAAVGS
IAVAGMVRSG YPRAFGAGII CNAGTLGILI PPSIVMVVYA AATETSVGKL FVAGVVPGLL
LGVILMVVIY IVARVKKLPA QPRASFREWL AAARRAGWGL LLLVIILGGI YSGLFTPTEA
AAVAAVYSAF VALFVYKDMR LRDCPKVLLE SGRLSIMLMF IIANAMLFAH VLTTEQIPQQ
ITEWVVQEGL TPIGFLLMVN VVLLVAGSFM EPSAIVLILA PIFFPIAMKL GIDPIHLGIV
MVVNMEIGLV HPPVGLNLFV TSAVTGMPLG ATIRAALPWL MILLLFLILV TYVPLISLWL
PGLLGMS
|
|---|
| |