| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_52180 |
|---|
| Symbol | relA |
|---|
| ID | 4383106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 4626261 |
|---|
| End bp | 4628504 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639326779 |
|---|
| Product | GTP pyrophosphokinase |
|---|
| Protein accession | YP_792342 |
|---|
| Protein GI | 116048857 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00224344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.0200902 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTACAGG TGAGAGCGCA CCAGCCGGTC AACACCGACG GCAGTATCAA CCTCGAGGCC
TGGCTGGACC ACGTCCAGAA CCTCGTCCCC GGGCTCGATC GTCAGGGCTT GCTGGAGGCT
TGCGAGTTCG CTCGCGAATC CGAGCAGCGA GCGATCGCCG CACAGAACTC CTGGGCAGAA
GGCACGTCCA GCTTCCAGAC CGGACTGGAA ATCGCCGAGA TCCTCGCGGA CCTCAAGCTG
GATCAGGAGT CCCTGGTCGC CGCGGTCATC TATCGAGGCG TGCGGGAAGG CAAGATCACC
CTGGAAGCGG TCAACAAGCA TTTCGGGCCG GTGGTGGCCA AGCTGATCGA GGGCGTGCTG
CGCATGGCCG CAATCAGCGC CAGCCTCAAT CCGCGCCATT CCATGGTGCT GGGTACCCAG
GCGCAGGTGG AGAACCTGCG CAAGATGCTG GTGGCGATGG TCGACGACGT TCGCGTCGCT
CTGATCAAGC TGGCCGAGCG CACCTGCGCC ATTCGCGCGG TGAAGAATGC CGACGAGGAA
AAGCGCCACC GCGTCGCCCG GGAAGTCTTC GATATCTACG CGCCGCTGGC CCACCGCCTG
GGCATCGGGC ATATCAAGTG GGAGCTGGAG GACCTGTCCT TCCGTTACCT CGAGCCCGAC
CAGTACAAGC AGATCGCCAA GCTGCTGCAC GAGCGCCGGC TGGATCGCGA GCAGTACATC
GCCAACGTGA TGAGCCAGTT GAAGGAAGCT CTCGCGGCCA CCGGCGTACA GGCCGATCTC
AGCGGGCGGG CGAAACACAT CTATTCGATC TGGCGCAAGA TGCAGCGCAA GGGCCTGGAC
TTCAGCCAGA TCTACGACGT TCGCGCCGTG CGCGTGCTCG TTCCGGAGAT GCGCGACTGC
TACACCGCGC TGGGCATCGT GCATACCCTC TGGCGGCACA TTCCCAAGGA GTTCGACGAC
TACATCGCCA ACCCCAAGGA AAACGGCTAT CGCTCGCTGC ATACCGCAGT GATCGGCCCC
GAGGGGAAGG TGCTGGAAGT ACAGATCCGT ACCCACTCCA TGCACGAAGA GGCGGAGCTC
GGGGTCTGCG CGCACTGGCG CTACAAGGGG ACCGACGTCA AGGCCAGCTC CAACCATTAC
GAGGAAAAGA TCTCCTGGCT GCGCCAGGTG CTCGAATGGC ACGAGGAACT GGGCGACATC
GGTGGCCTGG CGGAGCAACT GCGGGTCGAT ATCGAGCCGG ACAGGGTCTA CGTCTTCACT
CCCGACGGCC ACGCCATCGA CCTGCCCAAG GGCGCGACCC CGCTGGATTT CGCCTATCGG
GTCCACACTG AAGTCGGGCA CAACTGCCGC GGGGCGAAGA TCAACGGACG CATCGTGCCG
CTGAACTACA GCCTGCAGAC CGGCGAGCAG GTCGAGATCA TCACCGGCAA GCACAGCGGT
CCGAGCCGTG ACTGGCTGAA CAGCAACCTG GGCTATGTCA CCACCTCCCG GGCGCGGGCG
AAGATCGTCC ACTGGTTCAA GCTGCAGGCG CGGGACCAGA ACGTCGCTGC CGGCAAGGCC
CTGATCGAAC GCGAGCTGTC GCGCCTGGCG CTGCCGCCGG TGGATTTCGA CCGGCTGGCG
GAGAAGGCCA ACGTGCGTAC CGCCGAGGAT ATGTTCGCCG CTCTCGGCGC CGGCGACCTG
CGCTTGGCGC ACCTGGTCAA CTATGCCCAG CAACTGGTCG AGCCGGACCG CGACAGCGAG
CAACTCGAAC TGATCCCGCG CAAGCCGAGC AAGATCGGCC ACGGCAAGCG CGGCGACGTG
CAGATCCAGG GCGTCGGCAA CCTCCTGACG CAGATGGCCG GCTGCTGCCA GCCGCTGCCG
GGAGATCCCA TCGTCGGCTA CATCACGCTG GGCCGTGGGG TCACCATCCA CCGCCAGGAT
TGCGCCACCG CGCTGCAACT GGCGGGACGC GAACCGGAGC GGATGATCCA GGTCAGTTGG
GGGCCGGAGC CGGTTCGCAC CTATCCGGTG GATATCGCGA TCCGTGCCTA TGATCGTTCC
GGCCTGTTGC GCGACGTGTC CCAGGTGCTG CTCAATGAGC GGATCAACGT TCTGGCGGTG
AATACCCGTT CGAACAAGGA AGACAACACC GCGACCATGC AACTGACCAT CGAGATTCCC
GGTCTGGACG CTCTTGGACG CCTGCTGGCG CGCGTTTCGC AACTGCCCAA CATCATCGAG
GCGCGGCGCA ACCGTACGCC TTGA
|
|---|
| Protein sequence | MVQVRAHQPV NTDGSINLEA WLDHVQNLVP GLDRQGLLEA CEFARESEQR AIAAQNSWAE
GTSSFQTGLE IAEILADLKL DQESLVAAVI YRGVREGKIT LEAVNKHFGP VVAKLIEGVL
RMAAISASLN PRHSMVLGTQ AQVENLRKML VAMVDDVRVA LIKLAERTCA IRAVKNADEE
KRHRVAREVF DIYAPLAHRL GIGHIKWELE DLSFRYLEPD QYKQIAKLLH ERRLDREQYI
ANVMSQLKEA LAATGVQADL SGRAKHIYSI WRKMQRKGLD FSQIYDVRAV RVLVPEMRDC
YTALGIVHTL WRHIPKEFDD YIANPKENGY RSLHTAVIGP EGKVLEVQIR THSMHEEAEL
GVCAHWRYKG TDVKASSNHY EEKISWLRQV LEWHEELGDI GGLAEQLRVD IEPDRVYVFT
PDGHAIDLPK GATPLDFAYR VHTEVGHNCR GAKINGRIVP LNYSLQTGEQ VEIITGKHSG
PSRDWLNSNL GYVTTSRARA KIVHWFKLQA RDQNVAAGKA LIERELSRLA LPPVDFDRLA
EKANVRTAED MFAALGAGDL RLAHLVNYAQ QLVEPDRDSE QLELIPRKPS KIGHGKRGDV
QIQGVGNLLT QMAGCCQPLP GDPIVGYITL GRGVTIHRQD CATALQLAGR EPERMIQVSW
GPEPVRTYPV DIAIRAYDRS GLLRDVSQVL LNERINVLAV NTRSNKEDNT ATMQLTIEIP
GLDALGRLLA RVSQLPNIIE ARRNRTP
|
|---|
| |