| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_51880 |
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| Symbol | oprD |
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| ID | 4380036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 4606220 |
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| End bp | 4607551 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639326753 |
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| Product | basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor |
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| Protein accession | YP_792316 |
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| Protein GI | 116048883 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.286241 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0103947 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTGA TGAAGTGGAG CGCCATTGCA CTGGCGGTTT CCGCAGGTAG CACTCAGTTC
GCCGTGGCCG ACGCATTCGT CAGCGATCAA GCCGAAGCGA AGGGGTTCAT CGAAGACAGC
AGCCTCGACC TGCTGCTCCG CAACTACTAT TTCAACCGTG ACGGCAAGAG CGGCAGCGGG
GACCGCGTCG ACTGGACCCA AGGCTTCCTC ACCACCTATG AATCCGGCTT CACCCAAGGC
ACCGTCGGCT TCGGCGTCGA TGCCTTCGGC TACCTCGGTC TGAAGCTCGA CGGCACCTCC
GACAAGAGCG GTACCGGCAA CCTGCCAGTG ATGAACGACG GCACGCCCCG TGACGACTAC
AGCCGCGCCG GTGGCGCCGT GAAGGTACGC ATCTCCAAGA CCATGTTGAA GTGGGGCGAG
ATGCAGCCGA CCGCTCCGGT CTTCGCCGCC GGCGGCAGCC GCCTGTTCCC GCAGACCGCG
ACCGGCTTCC AACTGCAGAG CAGCGAACTC GAAGGGCTCG ATCTCGAAGC GGGCCACTTC
ACCGAAGGCA AGCAGGGCAC CACCACCAAG TCGCGCGGCG AACTCTACGC AACCTATGCA
GGCGAGACCG CCAAGAGCGC CGATTTCATT GGGGGCCGCT ACGCAATCAC CGATAACCTC
AGCGCCTCCC TGTACGGTGC TGAACTCGAA GACATCTATC GTCAGTATTA CCTGAACAGC
AACTACACCA TCCCACTGGC ATCCGACCAA TCGCTGGGCT TCGATTTCAA CATCTACCGC
ACAAACGATG AAGGCAAGGC CAAGGCCGGC GACATCAGCA ACACCACTTG GTCCCTGGCG
GCAGCCTACA CTCTGGATGC GCACACTTTC ACCTTGGCCT ACCAGAAGGT CCATGGCGAT
CAGCCGTTTG ATTATATCGG CTTCGGCGAG AACGGTTCCG GCGGCGGCGG TGACTCGATT
TTCCTCGCCA ACTCCGTGCA GTACTCCGAC TTCAACGGCC CCGGCGAGAA ATCCTGGCAG
GCCCGCTACG ACCTGAACCT CGCCTCCTAT GGCGTTCCCG GCCTGACTTT CATGGTCCGC
TATATCAATG GCAAGGACAT CGATGGCACC AAGATGTCTG ACAACAACGT CGGCTATAAG
AACTACGGCT ACGGCGAGGA CGGCAAGCAC CACGAGACCA ACCTCGAAGC CAAGTACGTG
GTCCAGTCCG GTCCGGCCAA GGACCTGTCG TTCCGCATCC GCCAGGCCTG GCACCGCGCC
AACGCCGACC AGGCCGAAGG CGACCAGAAC GAGTTCCGCC TGATCGTCGA CTATCCGCTG
TCGATCCTGT AA
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| Protein sequence | MKVMKWSAIA LAVSAGSTQF AVADAFVSDQ AEAKGFIEDS SLDLLLRNYY FNRDGKSGSG
DRVDWTQGFL TTYESGFTQG TVGFGVDAFG YLGLKLDGTS DKSGTGNLPV MNDGTPRDDY
SRAGGAVKVR ISKTMLKWGE MQPTAPVFAA GGSRLFPQTA TGFQLQSSEL EGLDLEAGHF
TEGKQGTTTK SRGELYATYA GETAKSADFI GGRYAITDNL SASLYGAELE DIYRQYYLNS
NYTIPLASDQ SLGFDFNIYR TNDEGKAKAG DISNTTWSLA AAYTLDAHTF TLAYQKVHGD
QPFDYIGFGE NGSGGGGDSI FLANSVQYSD FNGPGEKSWQ ARYDLNLASY GVPGLTFMVR
YINGKDIDGT KMSDNNVGYK NYGYGEDGKH HETNLEAKYV VQSGPAKDLS FRIRQAWHRA
NADQAEGDQN EFRLIVDYPL SIL
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