Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_46680 |
Symbol | |
ID | 4382278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 4160669 |
End bp | 4162102 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639326319 |
Product | putative transporter |
Protein accession | YP_791884 |
Protein GI | 116049313 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.013844 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0000129498 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAACAGCC CCGCCCTGCC CCTTTCCCGT GGCTTGCGCA TCCGCGCCGA ACTCAAGGAA CTGCTGACCC TCGCCGCGCC GATCATGATC GCGCAACTGG CGACCACCGC CATGGGCTTC GTCGATGCGG TGATGGCCGG GCGCGCCAGT CCGCACGACC TGGCAGCGGT GGCGCTGGGC AACTCGATCT GGATCCCGAT GTTCCTGCTG ATGACCGGCA CCCTGCTCGC CACCACGGCC AAGGTCGCCC AGCGCTACGG CGCCGGCGAC CAGCCCGGCA CCGGGCCGCT GGTGCGCCAG GCGCTGTGGC TGGCGCTGCT GATCGGACCG CTGTCGGGGG CGGTGCTGTG GTGGTTGTCG GAGCCGATCC TCGGCTTGAT GAAAGTGCGC CCGGAACTGA TCGGGCCGAG CCTGCTGTAC CTCAAGGGCA TCGCCCTGGG CTTCCCGGCG GCGGCGCTGT ACCACGTACT ACGCTGCTAC ACCAACGGCC TGGGACGGAC CCGGCCGAGC ATGGTGCTGG GGATCGGCGG GCTGCTGCTG AACATCCCGA TCAACTACGC GCTGATCTAC GGCCACTTCG GCATGCCGAA GATGGGCGGC CCCGGCTGCG GCTGGGCCAC CGGCTCGGTG ATGTGGTTCA TGTTCCTCGG CATGCTGTTC TGGGTGAACA AGGCCTCGAT CTACCGCGCC AGCCAGTTGT TCTCGCGCTG GGAGTGGCCG GATCGCGCGA CCATCGGCCC GCTGGTGGCG GTCGGCCTGC CGATCGGCAT CGCGGTGTTC GCCGAGTCGA GCATCTTCTC GGTGATCGCC CTGCTGATCG GCGGGCTCGA CGAGAACGTG GTGGCCGGCC ACCAGATCGC CCTGAACTTC AGCGCGCTGG TGTTCATGAT TCCCTATTCG CTGGGGATGG CGGTGACCGT GCGGGTCGGC CACAACCTCG GCGCCGGCCT GCCGCGCGAC GCGCGCTTCG CCGCCGGCGT GGGGATGGCC GCGGCGCTGG GCTACGCCTG CGTCTCGGCG AGCCTGATGC TGTTGCTGCG CGAGCAGATC GCCGCGATGT ATTCGCCGGA CCCGGCGGTG ATCGCCATCG CCGCCTCGCT GATCGTGTTC TCCGCGCTGT TCCAGTTCTC CGACGCCCTG CAGGTCACCG CCGCCGGGGC CCTGCGCGGC TACCAGGACA CCCGGGTGAC GATGATCATG ACCCTGTTCG CCTACTGGGG CATCGGCCTG CCGGTGGGCT ACAGCCTCGG CCTCACCGAC TGGTTCCAGG AACCCACCGG ACCGCGCGGC CTGTGGCAAG GCCTGGTGGT GGGCCTGACC GGCGCGGCGA TCATGCTCTG CATCCGCCTG GCGCGCAGCG CGCGGCGCTT CATCCGCCAG CACGAGCGCC TGCAGCGGGA GGACGCGGCG GCCGCCTCAG TCCTTGGCCG GTAG
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Protein sequence | MNSPALPLSR GLRIRAELKE LLTLAAPIMI AQLATTAMGF VDAVMAGRAS PHDLAAVALG NSIWIPMFLL MTGTLLATTA KVAQRYGAGD QPGTGPLVRQ ALWLALLIGP LSGAVLWWLS EPILGLMKVR PELIGPSLLY LKGIALGFPA AALYHVLRCY TNGLGRTRPS MVLGIGGLLL NIPINYALIY GHFGMPKMGG PGCGWATGSV MWFMFLGMLF WVNKASIYRA SQLFSRWEWP DRATIGPLVA VGLPIGIAVF AESSIFSVIA LLIGGLDENV VAGHQIALNF SALVFMIPYS LGMAVTVRVG HNLGAGLPRD ARFAAGVGMA AALGYACVSA SLMLLLREQI AAMYSPDPAV IAIAASLIVF SALFQFSDAL QVTAAGALRG YQDTRVTMIM TLFAYWGIGL PVGYSLGLTD WFQEPTGPRG LWQGLVVGLT GAAIMLCIRL ARSARRFIRQ HERLQREDAA AASVLGR
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