Gene PA14_46220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_46220 
Symbol 
ID4382302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp4108837 
End bp4109928 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content65% 
IMG OID639326276 
Productputative periplasmic spermidine/putrescine-binding protein 
Protein accessionYP_791841 
Protein GI116049356 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0209379 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.00257917 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAATCGA CTCGCAAGCT GCTGGCCGGC CTCGCGCTGG CCGTTTCCGC CGGGCTGGTC 
CAGGCCGCGC CGGAAGTACG GATCTACAAC TGGTTCGACT ACATCGCCCC GGACACCCTG
AAGAACTTCC AGGCGCAGAC CGGCATCGCG CCGAAGTACG ACGTCTACGA CAGCAACGAG
GTGCTCGAGG CCAAGCTGCT GTCCGGGCAT TCCGGCTACG ACCTGGTGGT GCCCAGCGAC
AGCTTCCTGC CCAACTACCT GAAGGCCGAA GTGTTCCAGC CGCTGGACAA GAGCAAGCTG
CCGAACTGGA AGAACCTCAA CCCGGCCCTG CTCAAGGTGC TTGCCGGCAA GGACCCCGGC
AACCGCTACG TGATGCCCTA CATGTGGGGC ACCAACGGCA TCGCCTACAA CCTCGACAAG
GTCCGCGCGG TGCTCGGCGA CGATGCGCCG CTGGACTCCT GGGACCTGGT GTTCAAGCCG
GAGAACCTGG CGAAGCTGCA ACAGTGCGGC GTGGCCTTCC TCGACTCGCC CACCGAGGTG
ATCCCCGAGG TGCTGCACTA TCTCGGCCTG TCGCCCAACA GCCACCAACC GGAAGACTAC
CGCCGAGCCG AGGAGCACCT GGCGAAGCTG CGCCCGTACA TCACCTACTT CAGTTCCTCG
AAGTTCGTCA GCGACCTGGC CAACGGCAAC GTCTGCGTGG CCATCGCCTG GTCCGGCGGA
GCGATGCAGG CGGCCAACCG GGCCAGGGAA GCGAAGAACG GCATACGCAT CGAGTACCGC
ATTCCGAAGG AGGGCGCCGC GGCCTGGTTC GACGTGCTGG CGATTCCGCG CGACGCGAAG
AACGTCGAGC AGGCGCACGC CTTCCTCAAC TACCTGCTGC GCCCGGAGGT GGTGGCGCCG
ATCTCCGACT ACGTGGCCTA CGCCAACCCG AACAAGGCGG CGGACGGTTT GATCTCGGCG
GAGTTGCGCG ACAATCCGAA CGTCTACCCG CCGGAAGAAG TGCAGGCCAG GCTGTATTCG
GTGGAGATGC TGCCGCCGAA GCTGGAGCGG CTGCGCACGC GGACCTGGAG CAGGATCAAG
ACCGGCAAGT GA
 
Protein sequence
MQSTRKLLAG LALAVSAGLV QAAPEVRIYN WFDYIAPDTL KNFQAQTGIA PKYDVYDSNE 
VLEAKLLSGH SGYDLVVPSD SFLPNYLKAE VFQPLDKSKL PNWKNLNPAL LKVLAGKDPG
NRYVMPYMWG TNGIAYNLDK VRAVLGDDAP LDSWDLVFKP ENLAKLQQCG VAFLDSPTEV
IPEVLHYLGL SPNSHQPEDY RRAEEHLAKL RPYITYFSSS KFVSDLANGN VCVAIAWSGG
AMQAANRARE AKNGIRIEYR IPKEGAAAWF DVLAIPRDAK NVEQAHAFLN YLLRPEVVAP
ISDYVAYANP NKAADGLISA ELRDNPNVYP PEEVQARLYS VEMLPPKLER LRTRTWSRIK
TGK