| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_44890 |
|---|
| Symbol | hcpA |
|---|
| ID | 4384709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 4000090 |
|---|
| End bp | 4000608 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639326176 |
|---|
| Product | secreted protein Hcp |
|---|
| Protein accession | YP_791741 |
|---|
| Protein GI | 116049456 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.00654526 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 0.188551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCC CCGCCTATAT GTCCATCACC GGCACCAAGC AGGGCCTGAT CACCGCCGGC
GCCTTCACCG AGGACTCGGT CGGCAACACC TATCAGGAAG GCCACGAGGA CCAGGTGATG
GTCCAGGGCT TCAACCACGA AGTGATCATC CCGCGTGACC CGCAGTCCGG CCAGCCGACC
GGCCAGCGCG TGCACAAGCC TGTGGTCATC ACCAAGGTCT TCGACAAGGC CTCGCCGCTG
CTGCTGGCCG CCCTGACCTC CGGCGAGCGC CTGACCAAGG TCGAGATCCA GTGGTACCGC
ACCTCCGCCG CCGGCACCCA GGAGCACTAC TACACCACCG TCCTGGAAGA CGCGATCATC
GTCGACATCA AGGACTACAT GCACAACTGC CAGGACCCGG GCAACGCCCA CTTCACCCAC
CTGGAAGACG TGCACTTCAC CTACCGCAAG ATCACCTGGA CCCACGAAGT CTCCGGCACC
TCCGGCTCCG ACGACTGGCG CTCGCCGGTG GCAGGGTGA
|
|---|
| Protein sequence | MATPAYMSIT GTKQGLITAG AFTEDSVGNT YQEGHEDQVM VQGFNHEVII PRDPQSGQPT
GQRVHKPVVI TKVFDKASPL LLAALTSGER LTKVEIQWYR TSAAGTQEHY YTTVLEDAII
VDIKDYMHNC QDPGNAHFTH LEDVHFTYRK ITWTHEVSGT SGSDDWRSPV AG
|
|---|
| |