| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_44710 |
|---|
| Symbol | xdhA |
|---|
| ID | 4384721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 3985489 |
|---|
| End bp | 3986943 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639326164 |
|---|
| Product | xanthine dehydrogenase |
|---|
| Protein accession | YP_791729 |
|---|
| Protein GI | 116049468 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG4630] Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A |
|---|
| TIGRFAM ID | [TIGR02963] xanthine dehydrogenase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.0199275 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCAGGT TCCTGCTCAA TCGGGAGATC CGCGTCGAAG AACGCCTGGA CCCCAACCTC
ACCGTCCTCG ACTACCTACG CCGGCACCTC GGCAAGACCG GCACCAAGGA AGGCTGCGCC
TCCGGCGATT GCGGCGCCTG CACCGTGGTG GTCGGCGAAC TGGTCACCGG CGAGGATGGT
GCCGAACGCA TCCGCTATCG CAGCCTGAAC TCCTGCCTGA CCTTCGTTTC CGCCCTTCAC
GGCAAGCAAT TGATCACCGT CGAGGACCTC AAGCACCAGG ACCGCCTGCA CGACGTGCAG
CAGGCGATGG TCGACTGCCA TGGCTCGCAG TGCGGGTTCT GCACGCCGGG CTTCGTCATG
TCGCTGTTCG CCCTGCAGAA GAACAGCGCC GGCGCCGATC CGGCCAAGGC CCACGAGGCG
CTCGCCGGCA ACCTCTGCCG CTGCACCGGC TACCGGCCGA TCCTCGACGC CGCCGAGCAG
GCCTGCTGCC ACAAGCGCAC AGACCAGTTC GACGCCCGGG AAGCCGCCAC CATCGAGCAA
TTGCGCGCCA TCGCTCCGCG CGAAACCGCC GAGCTGAACA GCGGTGACCG GCGCTGCCTG
CTGCCGCTCA CCGTCGCCGA CCTGGCCGAC CTCTACGGCG CCAATCCGCA GGCACGCCTG
CTGGCCGGCG GCACCGACCT GGCGCTGGAG GTCACCCAGT TCCATCGCGA ACTGCCGGTG
ATGATCTATG TCGGCCACAT CCGCGAAATG AAACGCATCG AAGTGGGCGC CAACTGCCTG
GAAATCGGCG CCGCCACCCC GCTGACCGAC TGCTACCAGG CGCTGGCCGC GGACTACCCG
GACTTCGGCG AGTTGCTGCA GCGTTTCGCG TCCCTGCAGA TCCGCAACCA GGGCACCCTC
GGCGGCAATA TCGGCAACGC CTCGCCGATC GGCGACGCCC CGCCGCTGCT GATCGCCCTC
GGCGCGAAGA TCGTCCTGCG CCGCGGCGAA CGGCGCCGCG AGCTGCCGCT GGAGGAGTAC
TTCCTCGACT ACAAGGTCAC CGCCCGCGAA GAAGGCGAGT TCATCGAGAA GATCCTCGTC
CCGCGTGCCC GGCCCAGCCA GGCGTTCAAG GCCTACAAGG TCTCCAAGCG CATCGACGAC
GATATTTCCG CGGTCTGCGC CGCCATCAGC CTCGACCTGG AAGATGGCCG GATCGCCCGC
GCCAGGGTCG CCTTCGGCGG CATGGCGGCG ATTCCCAAGC GCGCCGCCGC CTGCGAAGCG
GCGCTGCAAG GCGCGCGCCT GGAAGCCGCC AGCTTCGAAC GCGCCGCGGC CGCCCTGGCG
AACGACTTCA CCCCGCTCAG CGACTTCCGC GCGAGCAAGG AATATCGCCT GCTGACCGCG
CAGAACCTGC TGCGCAAATG CTTCCTGGAG CTGCACGCTC CCGCCGTCGA AACCCGGGTG
ACCGCCTATG TCTAA
|
|---|
| Protein sequence | MIRFLLNREI RVEERLDPNL TVLDYLRRHL GKTGTKEGCA SGDCGACTVV VGELVTGEDG
AERIRYRSLN SCLTFVSALH GKQLITVEDL KHQDRLHDVQ QAMVDCHGSQ CGFCTPGFVM
SLFALQKNSA GADPAKAHEA LAGNLCRCTG YRPILDAAEQ ACCHKRTDQF DAREAATIEQ
LRAIAPRETA ELNSGDRRCL LPLTVADLAD LYGANPQARL LAGGTDLALE VTQFHRELPV
MIYVGHIREM KRIEVGANCL EIGAATPLTD CYQALAADYP DFGELLQRFA SLQIRNQGTL
GGNIGNASPI GDAPPLLIAL GAKIVLRRGE RRRELPLEEY FLDYKVTARE EGEFIEKILV
PRARPSQAFK AYKVSKRIDD DISAVCAAIS LDLEDGRIAR ARVAFGGMAA IPKRAAACEA
ALQGARLEAA SFERAAAALA NDFTPLSDFR ASKEYRLLTA QNLLRKCFLE LHAPAVETRV
TAYV
|
|---|
| |