| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_44660 |
|---|
| Symbol | ligA |
|---|
| ID | 4382903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 3976270 |
|---|
| End bp | 3978654 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639326159 |
|---|
| Product | NAD-dependent DNA ligase LigA |
|---|
| Protein accession | YP_791724 |
|---|
| Protein GI | 116049473 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0139158 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.0637496 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CCCAGGCTGC CGCCGAACGC ATCGCGCAAC TGCGAACCGA ACTGGACACC
CACAACTACC GTTACTACGT GCTCGACGAA CCGAGCATTC CCGACGCCGA ATACGATCGC
CTGTTCCGCG AGTTGCAGGC GCTGGAGACC GAGTACCCGC AACTGCTGAC GCCCGACTCG
CCGACCCAGC GGGTCAGCGG CACGCCGGCC TCGGCGTTCG GCGAAGTGCG CCATGAGATC
CCCATGCTCA GCCTCGGCAA CGCTTTCGAG GAGCAGGACC TGCTGGACTT CGACCGCCGC
GTACGCGAAG GACTGGCCGA CCTGTTGCCT GGCGGCGACC TGCTCGGCGG TGGCGCGGAG
GTCGAGTACA GTTGCGAGCC GAAGCTGGAC GGCCTGGCCG TCAGCCTGCT CTACGAACGC
GGCCAGTTGG TGCGCGGCGC CACCCGCGGC GATGGCAGCA CCGGCGAGGA CATCACCAGC
AACGTACGCA CCATTCGCAA CGTACCGCTG AAGCTGCACG GCGAAGGCTG GCCGGAGATC
CTCGAAGTGC GCGGCGAGGT GTTCATGTCC AAGGCCGGTT TCGAGGCGCT CAACGCCAAG
GCCGTGGAAA CCGGCGGCAA GACCTTCGCC AACCCGCGCA ACGCGGCGGC CGGCAGCCTG
CGCCAGCTGG ATTCGAAGAT CACCGCCAGT CGCCCGCTGG AGTTCTGTGC CTACGGCTTC
GGCCAGGTCA GCGGGACGCT GCCGGACACC CAGGTGGGCA TCCTCGAGGC GTTCCGCGGC
TGGGGTATCC CCATCAGTCG CGAGCTGCGC CTGGTCAAGG GCGCCCAGGC CTGCCGCGAC
TACTACGACG ACATCGGTCG CCGACGCGAT GCGCTGGCCT ACGAGATCGA CGGCGTGGTG
TTCAAGGTCA ACCGCATCGC CTTCCAGCGC GAACTGGGCT TCCGCGCGCG CGAGCCGCGT
TGGGCGATCG CCCACAAGTT CCCCGCGCGC GAGGAGCTGA CCGAGCTGCT GGGTGTCGAG
TTCCAGGTCG GCCGCACCGG CGCCGTGACC CCGGTGGCAC GCCTCAAGCC GGTGCAGGTG
GCCGGCGTCA CGGTGTCCAA TGCGACCCTG CACAACATGG ATGAAGTCGC CCGCCTGGGC
CTGCGCATCG GCGATACGGT GGTGATCCGC CGTGCTGGCG ATGTGATTCC GCAGGTCATG
CAGGTGGTGC TCGAGCGCCG CCCGGCGGAT GCGCAGGCTA TCGAGGTGCC CGAGCATTGC
CCGGTCTGCG GCTCGGCCGT GGAGCGGACC CAGTTGGTCA AGCGCAGCAA GGGCAAGGAG
TCGATCAGCG AGGGCGCCAT CTATCGCTGC GTCGGCCGCC TCTCCTGTCA GGCGCAGTTG
AAGCAGGCGA TCATCCATTT CGTATCGCGC CGGGCAATGG ACATCGACGG TCTTGGCGAC
AAGATCGTCG AGCAACTGGT GGATCGCGGG CTGGTCGCCT CGCCGGCGGA TCTCTATACC
CTGACCTATG AACAGGTGTT CGAGCTGGAA GGGTTCGCCG AGCTGTCCAC CAACAACCTG
CTGGCGGCCA TCGCCGATAG CCGCAAGCCT TCGCTGGCGC GCTTCATCTT CGCCCTGGGG
ATTCCCGACG TCGGCGAGGA AACCGCCAAG CTGCTGGCGC GTTCGCTGGG TTCGCTCGAG
CGGATCGGCA AGGCGCTCCC GGAAGTGTTG ACCTACCTGC CGGACGTCGG CGCCGAGGTA
GCCTACGAGA TCCACAACTT CTTCGCCGAC GAGCACAACC GCCAGGTGAT CGCCCAGTTG
CGCGATGCCG AACATGGCGT GCAGTTGCAG GAAGAGGGCG AGGTCGCCGC GGAGTTCGCC
GCTTGTGCCT CGCTGGCCGG TTTCATCGAC AAGCTGAACA TTCCCTTCAT CGCCGCCACC
GGCGCGGAAA AGCTGGCCAG CCGCTTCGGT TCGCTCGACG GCATCATCCG CGCCGACTGG
CTCGATCTAC GCCAGGTGGA GCGTCTGCCC GAGCGAGCGG CGAAAAGCCT GCGCGATTTC
TTCGACGAGC CGGCCAACGT GCAGCGTGCC CTGGCCATCG AGGCGCAGTT GCGTGAGTTC
GGCATGCATT GGCAGAGCGA GCGCAAGGCG GTCGAAGGCC TGCCTCTGGC CGGGCAGACC
TGGGTGCTGA CCGGCACCTT GGAGGCGATG AGCCGGGACG TGGCCAAGGA CAAGCTGGAA
GGGCTCGGCG CCAAGGTGGC CGGCTCGGTG TCGGCCAAGA CCCACTGCGT GGTCGCCGGG
CCCGGCGCCG GCTCGAAGCT GGCCAAGGCC AACGAGCTGG GCGTGAAGGT GCTCGACGAA
GACGGCCTGC TGAAACTGTT CGACGAGCAC GGCGTCGCCC GCTGA
|
|---|
| Protein sequence | MTDTQAAAER IAQLRTELDT HNYRYYVLDE PSIPDAEYDR LFRELQALET EYPQLLTPDS
PTQRVSGTPA SAFGEVRHEI PMLSLGNAFE EQDLLDFDRR VREGLADLLP GGDLLGGGAE
VEYSCEPKLD GLAVSLLYER GQLVRGATRG DGSTGEDITS NVRTIRNVPL KLHGEGWPEI
LEVRGEVFMS KAGFEALNAK AVETGGKTFA NPRNAAAGSL RQLDSKITAS RPLEFCAYGF
GQVSGTLPDT QVGILEAFRG WGIPISRELR LVKGAQACRD YYDDIGRRRD ALAYEIDGVV
FKVNRIAFQR ELGFRAREPR WAIAHKFPAR EELTELLGVE FQVGRTGAVT PVARLKPVQV
AGVTVSNATL HNMDEVARLG LRIGDTVVIR RAGDVIPQVM QVVLERRPAD AQAIEVPEHC
PVCGSAVERT QLVKRSKGKE SISEGAIYRC VGRLSCQAQL KQAIIHFVSR RAMDIDGLGD
KIVEQLVDRG LVASPADLYT LTYEQVFELE GFAELSTNNL LAAIADSRKP SLARFIFALG
IPDVGEETAK LLARSLGSLE RIGKALPEVL TYLPDVGAEV AYEIHNFFAD EHNRQVIAQL
RDAEHGVQLQ EEGEVAAEFA ACASLAGFID KLNIPFIAAT GAEKLASRFG SLDGIIRADW
LDLRQVERLP ERAAKSLRDF FDEPANVQRA LAIEAQLREF GMHWQSERKA VEGLPLAGQT
WVLTGTLEAM SRDVAKDKLE GLGAKVAGSV SAKTHCVVAG PGAGSKLAKA NELGVKVLDE
DGLLKLFDEH GVAR
|
|---|
| |