| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_43350 |
|---|
| Symbol | kdpD |
|---|
| ID | 4381652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 3860306 |
|---|
| End bp | 3862963 |
|---|
| Gene Length | 2658 bp |
|---|
| Protein Length | 885 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639326050 |
|---|
| Product | two-component sensor KdpD |
|---|
| Protein accession | YP_791615 |
|---|
| Protein GI | 116049580 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.619422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CCGCACGCGC CGACGCGCTG CTGGCCGACC TGCCCGCTGA CGGGCGCGGC
CGCCTGAAAG TCTTTCTCGG CGCGGCGCCG GGGGTGGGCA AGACCTTCGC CATGCTGCAG
GCCGCCCAGG CCCAGTTGCG CCAGGGCGTG AAACTGCGCG CCGGGGTGGT CGAGACCCAC
TCGCGGGCGG AAACCGAGTC CCTCCTCGCA GGCGTGCCGC AGCAGCCGCT GCGCAGCCTC
GAGTATCGAG GGATGAAACT GCAGGAAATG GACCTCGACG GTCTCCTCGC CGACCCGCCG
GCGCTGGCCC TGGTCGACGA ACTGGCCCAC AGCAACGTTC CCGGCAGCCG CCACGCCAAG
CGCTGGCAGG ACATCCAGGA GTTGCTGGCG GCGGGAATCG ACGTCTACAC AACGGTCAAC
GTCCAGCACC TGGAGAGCCT CAACGACCAG GTCCGCGACA TCACCGGCGT GCAGGTCCGC
GAGACGGTGC CGGACTGGGT GTTGCAGGAG GCCTACGAGA TCGTCCTCAT CGACCTGCCG
CCGCGCGAGC TGCTGGAGCG CCTGCGCGAG GGCAAGGTCT ACGTGCCGGA ACAGGCGCGG
GCGGCGATCG ATGCGTTCTT CTCGCAGACC AACCTCACCG CGCTGCGTGA ACTGGCGATG
CAGACCGCCG CCGCGCGGGT CGACGCCGAC CTCAACCACC GCTACCGCCA GCGCGGCGAG
GAGGCGCCGG CGTTGCGCGG GCGGCTGCTG GTGGGCATCG ACGGTGACGA ACAGGCCGAA
CGCCTGGTGC GCCACGCCTG CCGGGTCGCC GAACGTCGGC ACCTGCCCTG GAGCGTGGTA
CACGTCGATA CCGGCGGCTT GCGCGGCGAG CAGGCGCGGA TGCGCCTGCA GGGTGCGCAG
CAACTGGCCG AGCGGCTCGG CGGCGAGATC GTCGTGCTGC GCGCCGGCGA GGTGGCGCGG
ACCCTCCTGC AACATGCCCG CGAGCGCCGC GCCAGCCTGG TCCTGGTTGG CCAGTCGCGG
CGCCGCTGGT ACCGCCGGGC CTTCGGCGGT GGTCTCGCCG GGCGCCTGCT GCGCGACGGC
CAGGGCCTGG AGATCAGTGC CCTGGACAGC GAGGCCGACC TGCGCCCGGC GGAACCGCGG
CCACGCTATC CGGTGGTGTG GAACGACTAT CTGCTGGCGC TGCTGGCGAC CGCCCTGGCC
AGCGGCCTGG CCTGGGTCGT GGCGCACCTG CTGGAACTGC CGAACATCTC CCTGGTGTTC
CTGATGGCGG TGCTGCTGGT GGCAGTGCGC AGCAGCCTGA TGCCGGCACT GCTGTGCGCG
GTGGCGTCGT TCCTGGCCTA TGACTTCCTG TTCATCCCAC CGCATTTTTC CTTCGCCATC
CATCGCCATG AAGACCTGCT GAGCCTGGCG TTCTTCCTGT TCATGGCCGG CCTCACCGGC
AACCTGGCGG CACGCCAGCG GCGCCAGCTG GAGGCGCTGC GTGATACCCA GGAGGAAACC
AGCCTGCTGC TGGAGCTGTC GCGCAAGCTC ACCGCCGCCA CCGACCGCCA GGCGGTGCTG
GCCGCCGCCG CCCAGCAGTT CGACGACTGG AAGGACGTCG AGGTCTGCCT GCTCGGTCAG
GTCAATGGCG AGTGGAAGAC CGAGGCCGGC GTGCAGCGGC AACTCGCCGA CCAGGAACGG
GTCGCCGCCG ACTGGGCCTG GGCCCACGAC CAGCCGGCCG GCCTCGGTAC TGGCACGCTG
CCCGGAGGAC GCTGGTGGTG GTGGCCGCTG TCGGCGGAAG AGGGGCCGCT GGCACTGCTC
GGCGTCGCGC CGCTGGACGG CCAGCCGCTG AGTCCGCAGC GCCGGCGCCT GCTCGCCGCC
CTCGGCCAGC CCCTGGCCCA GGCCCTGGCC CGTGCGCGCC TGGCCGAGGA CCTGGAGGCC
GCGCGCCTGC ACGGCGAGAC CGAGCAACTG CGCAGCGCCT TGCTCGCCTC GGTGTCCCAC
GACCTGCGCA CGCCGCTGAC GGCCATGCGC GGTTCCATCG ACAGCCTGCT GGCGCTGGGC
GAGGCGATCC CGCCGGCGGA TCGTCGCGAA CTGCTGGAAA GCACCCGCGA CGAGGCCGAG
CGACTGGACC GCTATATCCA GAACCTGCTC GACATGACCC GTCTTGGCCA CGGTGGCCTG
AAGCTGGCGC GCGACTGGGT GGCGCCGGGC GACATCGTCG GCAGCGCGCT GAACCGCCTG
CGCGCGGTGC TGGCGCCGTA CCGGGTGCAG GCGATCGTGG CCAACGACCT GCCGTTGCTC
TACGTGCATG CGGCGCTGAT CGAACAGGCG CTGATCAACG TGCTGGAAAA TGCCGCGCGC
TTCTCGCCGA GCCACGGCCG GTTGCGCATC GAGGTCAGCC AGGATGCCGC CGAGCTGCGT
TTCGCGGTGA GCGACGAGGG GCCGGGGATT CCCGAGGCCG AGCGGGAGAA GATCTTCGAC
ATGTTCTACA CCGCTGCCCG TGGCGACCGC GGTGGCCAGG GCACCGGCCT GGGCCTGGCG
ATCTGCCAGG GCATGATCGG CGCCCACGGC GGGCGCATCA GCGTCGGCGA AGGCCTCGAC
GGTCGCGGCA CCACGCTGGT CCTGCACCTG CCGCTGCATC CGCAGCCGGA CCTCGGGCAA
CTGGAGGGCG ACGAATGA
|
|---|
| Protein sequence | MTDTARADAL LADLPADGRG RLKVFLGAAP GVGKTFAMLQ AAQAQLRQGV KLRAGVVETH
SRAETESLLA GVPQQPLRSL EYRGMKLQEM DLDGLLADPP ALALVDELAH SNVPGSRHAK
RWQDIQELLA AGIDVYTTVN VQHLESLNDQ VRDITGVQVR ETVPDWVLQE AYEIVLIDLP
PRELLERLRE GKVYVPEQAR AAIDAFFSQT NLTALRELAM QTAAARVDAD LNHRYRQRGE
EAPALRGRLL VGIDGDEQAE RLVRHACRVA ERRHLPWSVV HVDTGGLRGE QARMRLQGAQ
QLAERLGGEI VVLRAGEVAR TLLQHARERR ASLVLVGQSR RRWYRRAFGG GLAGRLLRDG
QGLEISALDS EADLRPAEPR PRYPVVWNDY LLALLATALA SGLAWVVAHL LELPNISLVF
LMAVLLVAVR SSLMPALLCA VASFLAYDFL FIPPHFSFAI HRHEDLLSLA FFLFMAGLTG
NLAARQRRQL EALRDTQEET SLLLELSRKL TAATDRQAVL AAAAQQFDDW KDVEVCLLGQ
VNGEWKTEAG VQRQLADQER VAADWAWAHD QPAGLGTGTL PGGRWWWWPL SAEEGPLALL
GVAPLDGQPL SPQRRRLLAA LGQPLAQALA RARLAEDLEA ARLHGETEQL RSALLASVSH
DLRTPLTAMR GSIDSLLALG EAIPPADRRE LLESTRDEAE RLDRYIQNLL DMTRLGHGGL
KLARDWVAPG DIVGSALNRL RAVLAPYRVQ AIVANDLPLL YVHAALIEQA LINVLENAAR
FSPSHGRLRI EVSQDAAELR FAVSDEGPGI PEAEREKIFD MFYTAARGDR GGQGTGLGLA
ICQGMIGAHG GRISVGEGLD GRGTTLVLHL PLHPQPDLGQ LEGDE
|
|---|
| |