Gene PA14_42980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_42980 
Symbol 
ID4382924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp3821431 
End bp3824064 
Gene Length2634 bp 
Protein Length877 aa 
Translation table11 
GC content69% 
IMG OID639326019 
Productputative ClpA/B-type protease 
Protein accessionYP_791584 
Protein GI116049611 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0542] ATPases with chaperone activity, ATP-binding subunit 
TIGRFAM ID[TIGR03345] type VI secretion ATPase, ClpV1 family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.172523 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.0852173 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATGA TCAACGTAGA CCTGCAACAA CTGATTCAGG CGCTGGATGC CGACACCCGG 
CGCGACCTCG AAGGCTCGGC CGAGCGCTGC GTAGCCCGTG GCGGCAGCAA GGTACTGGTG
GAGGACCTGT TGCTGGGCCT GCTGGAGCGT CCCCAGGGAC TGCTGGCGCG CGCCCTGCAG
GATGCCGCGG TGGACGCCGG CGAACTCAAC GCCGCGTTGC AAGCGCGGGG CGAGCACAGC
GCCTCGCGCA ATCCGGTGTT CGCGCCCGAG CTGGTGCAGT GGCTGCAGGA TGCGCTGTTG
CTGGCCAACC TCGAACTGGG CCGTAGCCAG ATCGACCAGG CGGCATTGAT CCTGGCCCTG
CTACGCAACC CGTTGCGCTA TGCCGGCAGC CGCTACCAGC CGCTGCTGGC GCGGCTCGAC
ATCGAGCGGT TGAAGGATTT CGCGCTCTCG CAGCCGCTGG AGGGCGCGCC CAGCGGCAAG
CCGGGCGGCG GCGAGTCCCT GTTGCAGCGT TTCACCCACA ACCTTACCCA GCAGGCGCGC
GACGGCAAGC TCGATCCGGT GCTCTGTCGC GACGGGGCTA TTCGCCAGAT GGTCGACATC
CTGGCCCGTC GGCGGAAAAA CAACCCCATC GTGGTCGGCG AGGCTGGCGT CGGCAAGACC
GCCATCGTCG AAGGCCTGGC CTCGCGGATC GCCGCAGGGG AAGTGCCGCC GGCGCTGAGG
GACGTCGAGC TGTTGTCCCT CGACATGGGC CTGTTGCAGG CCGGTGCCAG CGTGAAGGGC
GAGTTCGAGC GGCGCCTGAA AGGCGTCATC GACGAAGTGA AGGCAGCGCC CAGGCCGACC
ATCCTGTTCA TCGACGAGGC CCATACGCTG ATCGGCGCGG GCGGTCAGGC CGGCGGCTCG
GATGCCGCCA ACCTGCTCAA GCCGGCCCTG GCACGTGGCG AGTTGCGCAC CATCGCGGCG
ACGACCTGGG CCGAATACAA GAAGTATTTC GAGAAGGACC CGGCGCTGGC CCGGCGCTTC
CAGCCCGTGC AGTTGCATGA GCCGAGCGTT GCCGAGGCGG TGACGATCCT GCGTGGCCTG
GCCCGGGTTT ACGAGGAAAG CCACGGTATC TACCTGCGCG ACGACGCGGT GGTGGCCGCC
GCCGAACTGT CCGCCCGCTA CCTGGCGGGT CGCCAGTTGC CGGACAAGGC CGTCGACGTC
CTCGACACCG CCTGTGCGCG GGTGCGCATC AGCCTGGCGG CGGCGCCGGA GAGCCTCGAG
CGCCTGCGCG GCGAGCTGGC CGAAGGTGAG CGCCAGCGCC AGGCCCTGCG CCGCGATGCC
GAGGCAGGCC TGCCGATCGA CCACGATGCC CTGCAGGCGC TGGAGGAGCG TCTGGCCCAG
GCGGAAAGCG AGCGGCACGT ACAGGAGGAC CAGTGGAGCC GCCAGCGCGA ACTCGCCGAG
CGCCTGCTCG CCCTGCGCCA GCAATTGGCC AGGGCCCGCG AGGCGAACCG GGAAGAGCAG
GGCAGCGAGG CGGATGCGGA GGCTTTCCCG GCCGACGAGC ATGGCGGTGT CGAAGCCCTG
GAAAAGGCCC TTCACGAAAC CCGCCAGGCG CTCGCCGATG CCCAGGCCCA GGGGCGGCTG
GTCAGCTTCG AGGTCTGCCC GCGCCTGGTT GCCGAGGTGA TCGGCGCCTG GACCGGCGTA
CCGGTGGAAC AACTGGCGCG GGAACACAAC GCCAAGGTGA TGGGGTTCGC TGACGACCTG
CGGGCGCGGA TCCGTGGCCA GGAACAGGCG GTCAGCGCCC TGGACCGCGC GATGCGCGCC
ACCGCGGCCG GGCTGAACAA GCCCGATGCG CCGGTCGGCG TGTTCCTGCT GGTGGGCCCG
AGCGGGGTGG GCAAGACCGA GACCGCGCTG GCGCTGGCCG ACCTGCTGTA TGGCGGCGAG
CGTTTCATCA CCACCATCAA CATGTCCGAG TTCCAGGAGA AGCACACCGT CTCGCGCCTG
ATCGGCGCGC CGCCCGGCTA TGTCGGCTAT GGCGAGGGTG GCATGCTCAC CGAGGCGGTA
CGCCAGAAGC CCTATTCGGT GATATTGCTG GACGAGGTGG AGAAGGCCGA TCCGGACGTG
CTCAACCTGT TCTACCAGAT CTTCGACAAG GGCGTGGCCA ACGATGGCGA AGGGCGCGAG
ATCGATTTCC GCAATACCTT GATCCTGATG ACCTCCAACC TCGCCAGCGA GCACATCGCC
GCGCTTTGCC AGGACGGCGC GCGGCCTTCC GCCGAACTCC TGGAGGAAAC CATCCGGCCG
GCGCTCAGCC GGCATTTCAA GCCGGCGCTG CTGGCGCGCA TGCGCGTGGT GCCTTACTAC
CCGGTGGGCG GCCCGGTACT GCGCGAGCTG ATCGAGATCA AGCTGGAACG CCTCGGCGAG
CGTCTGGCGC GCCGTCAACT GGCTTTCGAC TACAGCCAGG CGCTGGTGGA CCACCTGGCC
GAGCGTTGCA CCCAGAGCGA CAGCGGCGCA CGGTTGATCG ACCACCTGCT GGACACGCAC
CTGCTGCCGC TGGTGGCCGA CCGTTTGCTG GAAGCGATGG CGCGCGACGA GCGTCTCGAG
CGGGTCCATG CGACGCTGGG CGAGCACGGC CGCGTGCTCT GCGAGTTCGC CTGA
 
Protein sequence
MSMINVDLQQ LIQALDADTR RDLEGSAERC VARGGSKVLV EDLLLGLLER PQGLLARALQ 
DAAVDAGELN AALQARGEHS ASRNPVFAPE LVQWLQDALL LANLELGRSQ IDQAALILAL
LRNPLRYAGS RYQPLLARLD IERLKDFALS QPLEGAPSGK PGGGESLLQR FTHNLTQQAR
DGKLDPVLCR DGAIRQMVDI LARRRKNNPI VVGEAGVGKT AIVEGLASRI AAGEVPPALR
DVELLSLDMG LLQAGASVKG EFERRLKGVI DEVKAAPRPT ILFIDEAHTL IGAGGQAGGS
DAANLLKPAL ARGELRTIAA TTWAEYKKYF EKDPALARRF QPVQLHEPSV AEAVTILRGL
ARVYEESHGI YLRDDAVVAA AELSARYLAG RQLPDKAVDV LDTACARVRI SLAAAPESLE
RLRGELAEGE RQRQALRRDA EAGLPIDHDA LQALEERLAQ AESERHVQED QWSRQRELAE
RLLALRQQLA RAREANREEQ GSEADAEAFP ADEHGGVEAL EKALHETRQA LADAQAQGRL
VSFEVCPRLV AEVIGAWTGV PVEQLAREHN AKVMGFADDL RARIRGQEQA VSALDRAMRA
TAAGLNKPDA PVGVFLLVGP SGVGKTETAL ALADLLYGGE RFITTINMSE FQEKHTVSRL
IGAPPGYVGY GEGGMLTEAV RQKPYSVILL DEVEKADPDV LNLFYQIFDK GVANDGEGRE
IDFRNTLILM TSNLASEHIA ALCQDGARPS AELLEETIRP ALSRHFKPAL LARMRVVPYY
PVGGPVLREL IEIKLERLGE RLARRQLAFD YSQALVDHLA ERCTQSDSGA RLIDHLLDTH
LLPLVADRLL EAMARDERLE RVHATLGEHG RVLCEFA