| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_42900 |
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| Symbol | |
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| ID | 4382931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 3812214 |
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| End bp | 3815741 |
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| Gene Length | 3528 bp |
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| Protein Length | 1175 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639326012 |
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| Product | hypothetical protein |
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| Protein accession | YP_791577 |
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| Protein GI | 116049618 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.376126 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACT TCTTCAAGAA AGTCGGCGCC TTCCTGCGCA AGACGTGGGT CTGGACGCTG
CTGCTGGTAC TCCTGGCGGC ATTGCTGGTG TGGTTCGTCG GGCCGCTGCT GGCGGTCGCC
GACTACAAGT TCTGGGAAAG CCCGACCTCG CGGTTGCTGA GCATCAGTCT GATGTTCCTG
GTCTGGGGGC TGGCGATGGT CTTCGTCAGC TGGCGCGCCG GAGTGCGGCG CAAGGCCGTC
GAGGACAGCG ACGAGGGCCA GGAGCGCCTG CGCCGTGACG GTCTGATCGA AGACGAACAG
AAGGAATTGC GCAGCCGCTT CAAGGACGCC TTGCGCACCC TGAAGACCTC CAGCCTGTAC
CGCGGTCGTA GCGAGCGCTG GCGCAACGAG CTGCCCTGGT ACCTGCTGAT CGGCCCGCAG
GGAAGCGGCA AGACCAGCCT GCTGGACTTT TCCGGACTGG AGTTCCCGAT CAACCGGATC
GACCGCAAGC TGACCCGCGA TACCGCCGGC ACGCGCTACT GCGACTGGTA CTTCGCCGAC
CACGGCGTCC TGATCGACAC CGCCGGGCGC TACCTGACCC AAGCCGACGG CGAGGTCGAC
GGGGGCGCCT GGGCGACCCT GCTCGGCCTG TTGCGCAAGC GCCGCCGCGC ACGGCCGCTG
AATGGCGTGA TGGTGTCGAT TCCGGTGGAA ACGTTGCTCA GCGACGACGA GATGGCGCTG
GATACGCTGG CTCGCCAGGT GCGCGCGCGC CTGCAGGAAA TCCAGCAGAC CCTGCACCTC
GATCTGCCGG TCTACCTGGT GCTGAGCAAG GCCGACCAGT TGCTCGGCTT CGACGAGTTC
TTCGACCAGT TGAGCCGCGA GGAGAGCGAC CAGGTTCTGG GCACCAGCTT CGGCAAGGAG
CAGAACGGCA CCGATGTGAC GGTCCTGCGC CAGGCGTTCG AGGACCTTCT GCGACGCCTG
AACAGCCAGG TGATCATGCG CATCCACCAG GAGCGCGATA CTCTGCGTCG CGGTCGCATC
CTCGACTTCC CGCACCAGCT TGGCCAGATC GGCGAGCGGT TGTGCCTGTT CGTCGAACTC
GCCTTCACCG GCAATCGCTA CCAGCGCGCC AGCCGCCTGC GCGGCTTCTA CCTGACCAGC
GCGCCGCACC TGGCCCAGCA GCTGGATGAG GACACCGCCG GCATCGGCGC CAACCTGGGG
ATCGCCAGCG GCCTGCTGCC GACCCTGCGC AACGGGCGCT CGCGCTTCAT CCATCACCTG
CTGAGCCAGG TGATCTTCCC CGAGGCCAAC CTGGCAGGTC TCGATCGCCG CGAGCGCACG
CGCATCCACT GGGGCCAGCG CGCCCTGTAC GTCGGTTCGC TGGCGCTCCT TCTGCTATTC
GGCCTGCTCT GGGCTGGCGG TTTCTCGGCC AACCACGAGC GCCTGGAGCG GGTCCGCGAG
CTGGCGCAGC AATGGGCCCA GCAGCGCCAG GCGCTTGGCG AGCGCGACGA CGCCATGGCG
GCGCTGAAGA CGCTGGATAG CAGCTATGCG GCGACCACCG TGTTTCCGCC CAAAGGCGAA
GTCTCGCTGC ACGAGCGCGC CGGGCTGTAC CAGGGCAACG AGGTCAACCC GCCGCTGACC
GCTGCCTATC GCCGCGAGCT GGAGACGCAA CTGCTGCCGC GCGTGGCGCG GATGCTCGAA
GCGCAGATCC GCGGCAACAT GCAGAATCGC GAACGCCTGC TCAACAGCCT GCGGGCCTAC
CTGATGCTGA ATCTGCGCGA GCGCCGCGAG AACGGATGGC TCAAGGACTG GGTGGCTACC
GACTGGTCGC AGCGCTATGC CGGCAACGGC ACCGTGCAGA ATGGCCTGAA CACGCATTTC
GCCCGTCTGC TCGAGCAACC GTTCAGCTAT CCGCTGAACG ACACCCTGGT GGCCCAGGCA
CGCCAGGTGC TGCGCAGCGA GTCCCTGGCC AACGTGGTCT ACCGGGTGCT GCGCGAACAG
GCGCGAAGCC TGCCCGAGTA TCGCTTCGGC CAGCACCTGG GGCCGCAGGC CGGTCTGTTC
GTCGGCACCG ACTACGTGAT CCCGGGGTTC TACACCCAGC AGGGCTACCA GCAGTACTTC
GTGGTCCAGG GCGCCAGCCT GGTCAACGAC ATCCTTCGCG ACAACTGGGT CCTGGGCGAG
GGCAGCGGGA TCAGCGACAT GGACCTGCGG CGCCTGATGG TCGAACTCGA GCAGTTGTAT
TTCCGCGACT ACGCGAACTT CTGGAGCGAG GCGGTCGGAC GCCTGGGCCT GCTGCCGTTC
AACGATGCCG GCGAGGGCGC CGACCAGGTT TCCGGGCTGC TCGCCGCCAA CTCGCCGATC
CTCCAGTTGT TGCTGGAGGT CCGTGAGAAC ACCCGTTTCC CGGTCCTGGC GGAGAGCGCC
GAGGCGCTGG CAGAGGCCAG CGACAAGGCC GCGGAAAAGG GCGGCAAGCT GGGCAAGGCG
GCCGCCGCGG CGGCCGGCAA GGCCAGGGAC GCGTTGGCGA AGAACCTGCC GGATACCGCG
AAGAAGTCCC TGCAACGCCG CTTCGAGCCC CTGCATCGCC TGCTCGACGA TAACAACGGC
CCGGCGGCCG ACCTCACCCC GCTGTTGCAG GCGCTCAACG AGTTGCAGTT GCAACTCGCC
GGACTGGCGC GCGCCAGCCA GCCGGAGCAG GCGGCTTTCG ACATGGCGAA GAGCCGCATG
GGCGGCCAGC GCGATGCCCT GAGCAACCTG CGCAACGCCT CCGCGCGACT GCCGCGACCG
CTCGGCGGAT GGTTCAGCGT GCTGGCCGAA GACGCCTGGC GGCTGGTCCT CGGCGATGCC
TACCTGTACC TCAACCAGCG CTACCAGAGC GAGCTGTACG GTTTCTACAG CAAGGCGATC
AACAAGCGCT ACCCGTTCAA CGCGCACAGC GCCAGCGATG TCGCGGTCAG CGATTTCCGC
GAGTTCTTCA AGGCGCAGGG CGTCGCCGAA CGCTTCTTCG AAACCTACAT GCGGCCCTTC
GTCAGCGGCG ACCCGGGCAG CTACCGCCTG CGCAGCGTGG ACGGCTACAG CCTGCCGATG
TCCAAGGTCT ATCTCGACCA GATGGGCACG GCCCAGGTGA TTCGCCAGAG CTTCTTCGCC
GAGAACCCGG CCGAGCCGCA GGTGCGCTTC CGTCTGGAGC CCTATACCCT CGATCCTGGC
GTCAGCCGCG CCGAGTTCCG TTTCGACGGT CAATCCATGG AATACCGCCA CGGCCCGATC
GTGCCGATGT CGTTCAAGTG GCCCAGCGAC GCCGACGGCG GCCGCACCAG CCTGGTGCTG
GAGAAGATGG CCGGGCGACC GGTGGGAATC GAACGCAATA CCGGGCCCTG GTCGCTGTTC
AGGCTGTTCG ACCTGATGCA GACCGAGTAC CTCAGCGGGC GTGACGTGAT GGTGCTCAAG
GCCGACCTGG GCGGCCTGCG CGCCAACTAC CTGCTGCTCG CCCAGCGCAC GCCGAATCCG
TTCGATCTCG CGGTCCTGCG CAGCTTCCGC ATGCCGGTGC AGCTCTGA
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| Protein sequence | MKNFFKKVGA FLRKTWVWTL LLVLLAALLV WFVGPLLAVA DYKFWESPTS RLLSISLMFL
VWGLAMVFVS WRAGVRRKAV EDSDEGQERL RRDGLIEDEQ KELRSRFKDA LRTLKTSSLY
RGRSERWRNE LPWYLLIGPQ GSGKTSLLDF SGLEFPINRI DRKLTRDTAG TRYCDWYFAD
HGVLIDTAGR YLTQADGEVD GGAWATLLGL LRKRRRARPL NGVMVSIPVE TLLSDDEMAL
DTLARQVRAR LQEIQQTLHL DLPVYLVLSK ADQLLGFDEF FDQLSREESD QVLGTSFGKE
QNGTDVTVLR QAFEDLLRRL NSQVIMRIHQ ERDTLRRGRI LDFPHQLGQI GERLCLFVEL
AFTGNRYQRA SRLRGFYLTS APHLAQQLDE DTAGIGANLG IASGLLPTLR NGRSRFIHHL
LSQVIFPEAN LAGLDRRERT RIHWGQRALY VGSLALLLLF GLLWAGGFSA NHERLERVRE
LAQQWAQQRQ ALGERDDAMA ALKTLDSSYA ATTVFPPKGE VSLHERAGLY QGNEVNPPLT
AAYRRELETQ LLPRVARMLE AQIRGNMQNR ERLLNSLRAY LMLNLRERRE NGWLKDWVAT
DWSQRYAGNG TVQNGLNTHF ARLLEQPFSY PLNDTLVAQA RQVLRSESLA NVVYRVLREQ
ARSLPEYRFG QHLGPQAGLF VGTDYVIPGF YTQQGYQQYF VVQGASLVND ILRDNWVLGE
GSGISDMDLR RLMVELEQLY FRDYANFWSE AVGRLGLLPF NDAGEGADQV SGLLAANSPI
LQLLLEVREN TRFPVLAESA EALAEASDKA AEKGGKLGKA AAAAAGKARD ALAKNLPDTA
KKSLQRRFEP LHRLLDDNNG PAADLTPLLQ ALNELQLQLA GLARASQPEQ AAFDMAKSRM
GGQRDALSNL RNASARLPRP LGGWFSVLAE DAWRLVLGDA YLYLNQRYQS ELYGFYSKAI
NKRYPFNAHS ASDVAVSDFR EFFKAQGVAE RFFETYMRPF VSGDPGSYRL RSVDGYSLPM
SKVYLDQMGT AQVIRQSFFA ENPAEPQVRF RLEPYTLDPG VSRAEFRFDG QSMEYRHGPI
VPMSFKWPSD ADGGRTSLVL EKMAGRPVGI ERNTGPWSLF RLFDLMQTEY LSGRDVMVLK
ADLGGLRANY LLLAQRTPNP FDLAVLRSFR MPVQL
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