| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_42600 |
|---|
| Symbol | pscP |
|---|
| ID | 4380193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 3789550 |
|---|
| End bp | 3790668 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639325985 |
|---|
| Product | translocation protein in type III secretion |
|---|
| Protein accession | YP_791550 |
|---|
| Protein GI | 116049645 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02514] type III secretion system needle length determinant |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.193143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGC TGAACGCCGT GGATACGGCT CCGCTCGTGT CGTCCGACAC CCCTGCCCCC
CTTCCACCGC TGCGCGCGCA GCAGATCGCC TTCGAACAGG CCCTGCCCGC GCACCGACCG
CCGGCGCCCA GGCCACCGTT CGACAAGGGC GACGAAACGA CAGAGGCCGA AGAGCCCGCC
GCGACAGCCG ACGCGCCGAC CTCGACGCCT CTCGCCGACC AGCCCGCGGC GCCTGCCGCC
GACCGGCCGC CGACCACTCG GCAAGCCCCC GTGCCAGTTG CCGCGGACGC AACGCCAACG
CCAACGCCAA CGCCAACGCC AACGCCAACG CCAACGCCAA CGCCAACGCC AACGCCAACA
GTGTCGCCGT CCGGATCGGT AGCACGGCAA GCGCCGGCGG TCTCCGCGCG CGTCGCGGCG
TCCACGCAAG CCCGGGAGCC GGCCAGCGTT TCGGCGCCTC CGGTCGACGA ACCGCCGCTG
GTGCCGGTGT CCTCCCACCC GCAAATCGCA GGTCGGACGC ATGAGCGGCC GCAGCCCGGC
CCCGGCTTCC CGGCGAAAGC CGCAGCCGAG GTCGCGCCCA CGGCGCAGGC CAGTGCCCAG
GCTTCGCCGC CCGCGCCGAC AGCGGGCGGC GAAGGCCGCG GAGAGGAGCG TCGGCAACCC
GGAGAAACCG ATCCATCCGC ACTGCCCCCC GACGACCAAG CGCCTGTGCC ACTGCCTGCC
ATGCAAACCC CCGGCGACCG CCTGCTGGCA CGCCTGCTGG CATCGAGCGG GAGCCGGCCA
CTGCCGCTGG CCGATCTCGC GCGCCTGCTC GATGCCGTGC AGGGGCGCAT CCAGGTCGCC
AGCGCAGCCG AAAGCCATGC GGCGCGCCTG CAGGTGCAAC TGCCCCAGCT CGGCGCCGTG
GAGGTGCAGG TCCTGCATGG CCATGGCCAG TTGCAGATCG AGATCAGTGC CAGCCCCGGC
AGCCTGGCGT TGCTCCAGCA AGCCCGTGGC GAGTTGCTCG AACGCCTGCA ACGGCTGCAT
CCGGAACAAC CGGTGCAACT CACCTTCAAT CAGCAGCAGG ACAGCGGTCA GCGCTCGCGG
CAACGTCGCT ACCTGCATGA AGAGTGGCAA GCCGAATGA
|
|---|
| Protein sequence | MLKLNAVDTA PLVSSDTPAP LPPLRAQQIA FEQALPAHRP PAPRPPFDKG DETTEAEEPA
ATADAPTSTP LADQPAAPAA DRPPTTRQAP VPVAADATPT PTPTPTPTPT PTPTPTPTPT
VSPSGSVARQ APAVSARVAA STQAREPASV SAPPVDEPPL VPVSSHPQIA GRTHERPQPG
PGFPAKAAAE VAPTAQASAQ ASPPAPTAGG EGRGEERRQP GETDPSALPP DDQAPVPLPA
MQTPGDRLLA RLLASSGSRP LPLADLARLL DAVQGRIQVA SAAESHAARL QVQLPQLGAV
EVQVLHGHGQ LQIEISASPG SLALLQQARG ELLERLQRLH PEQPVQLTFN QQQDSGQRSR
QRRYLHEEWQ AE
|
|---|
| |