Gene PA14_42570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_42570 
SymbolpscN 
ID4380195 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp3787767 
End bp3789089 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content69% 
IMG OID639325983 
Producttype III secretion system ATPase 
Protein accessionYP_791548 
Protein GI116049647 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1157] Flagellar biosynthesis/type III secretory pathway ATPase 
TIGRFAM ID[TIGR01026] ATPase FliI/YscN family
[TIGR02546] type III secretion apparatus H+-transporting two-sector ATPase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.392052 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCGC CTCTCTCTCC TCTCATCGTC CGGATGCGCC ACGCCATCGA AGGCTGCCGG 
CCGATCCAGA TCCGCGGGCG GGTCACCCAG GTCACCGGAA CCCTGCTCAA GGCCGTGGTG
CCCGGCGTGC GCATCGGCGA ACTCTGCCAG TTGCGCAATC CCGACCAGAG CCTGGCGCTG
CTCGCCGAGG TCATCGGCTT CCAGCAGCAC CAGGCGCTGC TCACCCCGCT CGGCGAGATG
CTCGGGGTTT CCTCCAACAC CGAAGTCAGC CCTACCGGCG GCATGCATCG CGTGGCGGTT
GGCGAGCACC TGCTCGGGCA GGTGCTCGAC GGCCTCGGCC GCCCCTTCGA CGGCAGCCCG
CCGGCCGAGC CGGCGGCCTG GTATCCGGTC TACCGGGATG CCCCGCAACC GATGAGCCGG
CGCCTGATAG AGCGGCCGCT ATCGCTGGGT GTGCGCGCCA TCGACGGCCT GCTGACCTGC
GGCGAAGGCC AGCGCATGGG CATCTTCGCT GCCGCCGGCG GCGGCAAGAG CACCCTGCTG
GCCAGCCTGG TGCGCAATGC CGAGGTGGAT GTGACGGTAC TCGCCCTGGT CGGCGAACGC
GGTCGCGAAG TCCGCGAGTT CATCGAAAGC GACCTCGGCG AACAGGGGCT GCGCCGCTCG
GTGCTGGTGG TCGCCACTTC CGACCGACCG GCGATGGAGC GCGCCAAGGC CGGTTTCGTC
GCCACCAGCA TCGCCGAGTA TTTCCGCGAC CAGGGACGCC GCGTCCTGCT GCTGATGGAC
TCGCTGACCC GCTTCGCCAG GGCCCAGCGC GAAATCGGCC TGGCGGCCGG TGAACCGCCC
ACACGCCGCG GCTATCCGCC ATCGGTGTTC GCCGCGCTGC CACGCCTGAT GGAGCGTGCC
GGGCAATCCG AGCGGGGCTC GATCACCGCG CTCTACACCG TGCTGGTGGA AGGCGACGAC
ATGAGCGAGC CGGTGGCCGA CGAGACCCGC TCGATTCTCG ACGGGCACAT CGTGCTGTCG
CGCAAGCTGG CCGCCGCCAA CCACTATCCG GCCATCGACG TGCTGCACTC GGTGAGCCGG
GTCATGAACC AGATCGTCGA CGACGATCAG CGCCATGCGG CCGGACGCTT GCGCGAATGG
CTGGCGAAGT ACGAGGAAGT CGAGTTGCTG CTGAAGATCG GCGAATACCA GAAAGGCCAG
GACAGCGAAG CCGACCAGGC CATCGAGAAG ATCGGGGCGA TCCGCCAGTG GCTGCGCCAG
GGTACCCACG AAACCAGCGA TTACGCACAG GCCTGTGCGC AGTTGCGGAG CCTCTGCGCA
TGA
 
Protein sequence
MPAPLSPLIV RMRHAIEGCR PIQIRGRVTQ VTGTLLKAVV PGVRIGELCQ LRNPDQSLAL 
LAEVIGFQQH QALLTPLGEM LGVSSNTEVS PTGGMHRVAV GEHLLGQVLD GLGRPFDGSP
PAEPAAWYPV YRDAPQPMSR RLIERPLSLG VRAIDGLLTC GEGQRMGIFA AAGGGKSTLL
ASLVRNAEVD VTVLALVGER GREVREFIES DLGEQGLRRS VLVVATSDRP AMERAKAGFV
ATSIAEYFRD QGRRVLLLMD SLTRFARAQR EIGLAAGEPP TRRGYPPSVF AALPRLMERA
GQSERGSITA LYTVLVEGDD MSEPVADETR SILDGHIVLS RKLAAANHYP AIDVLHSVSR
VMNQIVDDDQ RHAAGRLREW LAKYEEVELL LKIGEYQKGQ DSEADQAIEK IGAIRQWLRQ
GTHETSDYAQ ACAQLRSLCA