| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_42500 |
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| Symbol | pcrD |
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| ID | 4380201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 3783280 |
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| End bp | 3785400 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639325977 |
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| Product | type III secretory apparatus protein PcrD |
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| Protein accession | YP_791542 |
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| Protein GI | 116049653 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACC TGAGCGGGCT TCTCGGCCGG GTCGGCGAGC GCAAGGACAT CCTGCTGGTG
GTGTTGCTGC TGGCGGTGGT GTTCATGATG GTGCTGCCGT TGCCACCGCT GCTGCTGGAC
ATCCTCATCG CCGTCAACAT CACCATCTCC GTGGTCCTGC TGATGATGTC GGTGTACATC
GGCTCGCCGT TGCAGTTCTC GGTGTTCCCG GCAGTGCTGC TGATCACCAC GCTGTTCCGC
CTGGCGCTGT CGGTGAGCAC CACGCGGATG ATCCTGCTGC AGGCCGACGC GGGGCAGATC
GTCAACACCT TCGGCAGCTT CGTGGTCGGC GGCAACCTGG TGGTGGGCAT CATCATCTTC
CTGATCATCA CCATCGTGCA GTTCCTGGTG ATCACCAAGG GTGCCGAGCG GGTCGCCGAG
GTCAGCGCGC GCTTTTCCCT GGATGCCATG CCGGGCAAGC AGATGAGCAT CGACGGCGAC
ATGCGTGCCG GCGTGATCGA TGTCAACGAG GCGCGGGCGC GGCGCGCGGT GATCGAAAAG
GAAAGCCAGA TGTTCGGCTC TATGGACGGC GCGATGAAAT TCGTCAAGGG CGACGCCATC
GCCGGGCTGA TCATTATCGT CGTCAACATC CTCGGCGGCA TCGCCATCGG CGTCACGCAG
AAGGGCCTGA GCACCGCCGA CGCGCTGCAA CTGTACGCGG TGCTGACCGT CGGCGATGGC
ATGGTCTCGC AGGTGCCGGC GTTGCTGATC GCCATCACCG CCGGGATCAT CGTCACGCGG
GTGTCTTCCG ACGAATCGGC GGACCTCGGC AGCGACATCG GCGAACAGGT GGTGGCGCAG
CCCAAGGCGC TGCTGATCGG CGGCCTGTTG CTGGTGCTGT TCGGCCTGAT TCCCGGTTTC
CCGACCCTGA CCTTCCTGGC TCTCGCGCTG CTGGTCGGCG GCGGCGGCTA CTTCATGCTC
TGGCGCCAGC GGCTCCAGGC CAGCGCCGGT TCCCGCGACC TGCCGGCGCT GCTCGCGCAG
GGCGCCGGAG CGCCATCGGC CAAGGCGCGC GGCAAGGCTG GCGGCGGCAA GCCGAAGGCC
GGGCGTCTCG CCGAGCAGGA AGAATTCGCC CTCACCGTGC CGTTGCTGAT CGACGTCGAT
GCCAGCCTCC AGGAACGTCT GGAGGCGATG TCGCTGAACG AGGAACTGGT GCGGGTACGA
CGCGCGCTGT ACCTGGATTT CGGCGTGCCG TTCCCGGGTA TCCACTTGCG CTTCAACGAA
GCGATGGGCG ATGGCGAATA CCTGGTGCAG CTACAGGAGG TCCCGGTCGC GCGCGGATGC
CTGCGGCCGG GCTGGTTGCT GGTGCGCGAA CGCGCCGCGC AGCTGGAATT GCTCGCGGTC
CCCCACGAGC CGGCGGAGCT GCAGGTGCCG GGAGAGGAAG CGAGCTGGGT GGAGCAGGCG
CATCAGGATC GCCTGGAGCG TTCCGGCTGT GCCTGCCTGG GCCTGGAGCA GGTGCTCACC
TGGCACCTGT CCCATGTGCT GCGGGAGTAC GCCGAGGATT TCATCGGCAT CCAGGAGACG
CGCTACCTGC TGGAGCAGAT GGAGCAGGGT TACGGCGAGC TGGTGAAGGA GGCACAGCGG
ATCGTTCCCC TGCAGCGGAT GACCGAGATT CTCCAGCGCC TGGTCGGCGA GGACATCTCG
ATCCGCAACA TGCGGGCGAT CCTCGAGGCG ATGGTGGAGT GGGGGCAGAA GGAGAAGGAC
GTGGTGCAGC TCACCGAGTA CATCCGCAGC AGCCTCAAGC GCTACATCTG CTACAAGTAC
TCCAGCGGCA ACAACATCCT TCCCGCCTAT CTGCTGGACC AGGCGGTGGA GGAGCAGATC
CGCGGTGGCA TCCGCCAGAC CAGCGCCGGC AGCTACCTGG CCCTCGACCC GGCGATAACC
CAGGCCTTCC TCGAGCGCGT GCGGCAGACC GTCGGCGATC TCGCGCAGAT GCAGAACCGG
CCGGTGCTGA TCGTTTCCAT GGATATCCGC CGCTACGTGC GCAAGCTGGT GGAGAGCGAC
TATGCCGGGC TGCCGGTGCT GTCCTACCAG GAGCTGACCC AGCAGATCAA CATCCAGCCG
CTTGGCAGGA TCGTGTTGTG A
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| Protein sequence | MNDLSGLLGR VGERKDILLV VLLLAVVFMM VLPLPPLLLD ILIAVNITIS VVLLMMSVYI
GSPLQFSVFP AVLLITTLFR LALSVSTTRM ILLQADAGQI VNTFGSFVVG GNLVVGIIIF
LIITIVQFLV ITKGAERVAE VSARFSLDAM PGKQMSIDGD MRAGVIDVNE ARARRAVIEK
ESQMFGSMDG AMKFVKGDAI AGLIIIVVNI LGGIAIGVTQ KGLSTADALQ LYAVLTVGDG
MVSQVPALLI AITAGIIVTR VSSDESADLG SDIGEQVVAQ PKALLIGGLL LVLFGLIPGF
PTLTFLALAL LVGGGGYFML WRQRLQASAG SRDLPALLAQ GAGAPSAKAR GKAGGGKPKA
GRLAEQEEFA LTVPLLIDVD ASLQERLEAM SLNEELVRVR RALYLDFGVP FPGIHLRFNE
AMGDGEYLVQ LQEVPVARGC LRPGWLLVRE RAAQLELLAV PHEPAELQVP GEEASWVEQA
HQDRLERSGC ACLGLEQVLT WHLSHVLREY AEDFIGIQET RYLLEQMEQG YGELVKEAQR
IVPLQRMTEI LQRLVGEDIS IRNMRAILEA MVEWGQKEKD VVQLTEYIRS SLKRYICYKY
SSGNNILPAY LLDQAVEEQI RGGIRQTSAG SYLALDPAIT QAFLERVRQT VGDLAQMQNR
PVLIVSMDIR RYVRKLVESD YAGLPVLSYQ ELTQQINIQP LGRIVL
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