Gene PA14_42350 details

Gene Information

• Locus tag: PA14_42350
• Symbol: pscC
• ID: 4380352
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa UCBPP-PA14
• Kingdom: Bacteria
• Replicon accession: NC_008463
• Strand: -
• Start bp: 3773504
• End bp: 3775306
• Gene Length: 1803 bp
• Protein Length: 600 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 639325964
• Product: Type III secretion outer membrane protein PscC precursor
• Protein accession: YP_791529
• Protein GI: 116049666
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family

Plasmid Coverage information

• Num covering plasmid clones: 36
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 69
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCCGCC TGCTGATCGG CGGACTGCTG GCGCTGCTGC CTGGCGCGGT CTTGCGCGCG 
CAGCCGCTGG ACTGGCCCAG CCTGCCTTAC GACTATGTGG CGCAGGGCGA AAGCCTGCGC 
GACGTGCTGG CCAACTTCGG CGCCAACTAC GATGCCTCGG TGATCGTCAG CGACAAGGTC 
AACGACCAGG TCAGCGGTCG CTTCGACCTG GAAAGCCCGC AGGCCTTCCT GCAGTTGATG 
GCCTCCCTCT ACAACCTCGG CTGGTACTAC GACGGCACCG TGCTGTACGT ATTCAAGACC 
ACCGAGATGC AGTCGCGGCT GGTGAGGCTG GAGCAGGTCG GCGAGGCCGA GCTGAAGCGC 
GCGCTGACCG CCGCCGGCAT CTGGGAACCG CGCTTCGGCT GGCGTGCCGA CCCTTCCGGG 
CGGCTGGTGC ACGTGTCCGG TCCGGGGCGC TATCTCGAAC TGGTCGAGCA GACCGCCCAG 
GTGCTGGAGC AGCAATACAC CCTGCGCAGC GAAAAGACCG GCGACCTCAG CGTGGAGATC 
TTCCCGCTGC GCTATGCGGT CGCCGAGGAC CGCAAGATCG AGTACCGCGA CGACGAGATC 
GAGGCGCCGG GCATCGCCAG CATCCTCTCG CGGGTGCTCA GCGATGCCAA CGTGGTTGCG 
GTGGGCGACG AGCCGGGCAA GCTGCGCCCG GGACCGCAAT CGAGCCATGC GGTGGTCCAG 
GCGGAACCGT CGCTGAACGC GGTGGTGGTG CGCGACCACA AGGACCGGTT GCCCATGTAT 
CGCCGCCTGA TCGAAGCCCT CGACCGGCCC TCGGCGCGGA TCGAGGTCGG CTTGTCGATC 
ATCGACATCA ATGCCGAGAA CCTCGCCCAG CTGGGCGTCG ACTGGAGCGC CGGGATTCGC 
CTGGGCAACA ACAAGTCGAT CCAGATCCGC ACCACCGGCC AGGATAGCGA GGAGGGCGGC 
GGCGCCGGTA ACGGCGCGGT CGGCAGCCTG GTGGACAGTC GCGGGCTGGA TTTCCTGCTG 
GCCAAGGTCA CCCTGTTGCA GAGCCAGGGG CAGGCGCAGA TCGGATCCCG GCCGACCCTG 
CTGACCCAGG AGAATACCCA GGCGGTGCTC GACCAGAGCG AAACCTACTA TGTGCGGGTC 
ACGGGCGAGC GGGTGGCCGA GCTGAAGGCG ATCACCTACG GCACCATGCT GAAAATGACG 
CCGCGAGTGG TGACTCTCGG CGATACGCCG GAGATCAGCC TCAGCCTGCA CATCGAGGAC 
GGCAGCCAGA AACCCAACAG CGCCGGCCTG GACAAGATCC CCACGATCAA CCGCACGGTG 
ATCGATACCA TCGCCCGCGT GGGCCATGGC CAGAGCCTGC TGATCGGCGG CATCTACCGC 
GACGAACTGA GCCAGAGCCA GCGCAAGGTA CCCTGGCTCG GCGACATTCC CTATCTCGGC 
GCGCTGTTCC GCACTACCGC GGACACCGTG CGCCGCTCGG TGCGGCTGTT CCTCATCGAG 
CCGCGGCTGA TCGACGATGG CGTCGGCCAT TACCTGGCGC TGAACAACCG TCGCGACCTG 
CGCGGTGGCC TGCTTGAAGT CGACGAGTTG TCGAACCAGA GCCTGTCGTT GCGCAAGCTG 
CTCGGTAGCG CCCGTTGCCA GGCGCTGGCG CCGGCCAGGG CCGAACAGGA GCGCTTGCGC 
CAGGCCGGCC AGGGTTCGTT CCTCACGCCC TGCCGGATGG GTGCGCAGGA GGGCTGGCGG 
GTGACCGACA GCGCCTGTCC CAAGGACGGC GCCTGGTGCG TCGGCGCGGA GCGCGGGAAT 
TAG 

 

Protein sequence

MRRLLIGGLL ALLPGAVLRA QPLDWPSLPY DYVAQGESLR DVLANFGANY DASVIVSDKV 
NDQVSGRFDL ESPQAFLQLM ASLYNLGWYY DGTVLYVFKT TEMQSRLVRL EQVGEAELKR 
ALTAAGIWEP RFGWRADPSG RLVHVSGPGR YLELVEQTAQ VLEQQYTLRS EKTGDLSVEI 
FPLRYAVAED RKIEYRDDEI EAPGIASILS RVLSDANVVA VGDEPGKLRP GPQSSHAVVQ 
AEPSLNAVVV RDHKDRLPMY RRLIEALDRP SARIEVGLSI IDINAENLAQ LGVDWSAGIR 
LGNNKSIQIR TTGQDSEEGG GAGNGAVGSL VDSRGLDFLL AKVTLLQSQG QAQIGSRPTL 
LTQENTQAVL DQSETYYVRV TGERVAELKA ITYGTMLKMT PRVVTLGDTP EISLSLHIED 
GSQKPNSAGL DKIPTINRTV IDTIARVGHG QSLLIGGIYR DELSQSQRKV PWLGDIPYLG 
ALFRTTADTV RRSVRLFLIE PRLIDDGVGH YLALNNRRDL RGGLLEVDEL SNQSLSLRKL 
LGSARCQALA PARAEQERLR QAGQGSFLTP CRMGAQEGWR VTDSACPKDG AWCVGAERGN