Gene PA14_39800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_39800 
Symbol 
ID4380236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp3546403 
End bp3546909 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content68% 
IMG OID639325758 
ProductECF subfamily RNA polymerase sigma-70 factor 
Protein accessionYP_791327 
Protein GI116049864 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones51 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCCGG CCGACGCCTC CCTGCACGAC GCTGTGAGCC ATCTCTATCA GGACCACCAT 
GGCTGGCTGC AAGGCTGGTT GCGGCGACGC CTGGGCTGCG CGGAAAACGC CGCCGACCTG
GCCCAGGACA CCTTCGCCCG CCTGCTCGCC TCGCGCCGGG TACTGGATGC GCGCGAACCG
CGCGCCTACC TGACCACCGT CGCCAAGGGG CTGATGATCA ACTGGTTCCA GCGCCAGTCG
CTGGAGCGCG CCTACCTCGA TGCCCTGGCC AACCTCCCGG AAGACCTCGC GCCGCCGCCG
GAACAGCGGT TGATGGTGCT GGAAACCCTG CATGAAGTAG ACGCCCTGCT CGGCAGCCTG
CCGGACAGGG TCCGCCAGGC GTTTCTCCTG GCGCAGATCG AAGGCCTGAA GTACGAAGCC
ATCGCCGAGC GCCTGGGCGT GTCCCTGGGC TCGGTCAAGC GCTACATGCA GCAGGCCTTC
CGCCAGTGCC TGGAGCTGAT GGAATGA
 
Protein sequence
MPPADASLHD AVSHLYQDHH GWLQGWLRRR LGCAENAADL AQDTFARLLA SRRVLDAREP 
RAYLTTVAKG LMINWFQRQS LERAYLDALA NLPEDLAPPP EQRLMVLETL HEVDALLGSL
PDRVRQAFLL AQIEGLKYEA IAERLGVSLG SVKRYMQQAF RQCLELME