| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_35380 |
|---|
| Symbol | ptxR |
|---|
| ID | 4384423 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 3145681 |
|---|
| End bp | 3146619 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639325409 |
|---|
| Product | transcriptional regulator PtxR |
|---|
| Protein accession | YP_790978 |
|---|
| Protein GI | 116050205 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0437689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.0554057 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG CCCTGGAGCG ATTGAATCAT CTGAACCTGA ATCACTTGTA TGCCTTCGTC
GCCGTCGCCG AACACAACAG CTTCACCGCC GCGGCGGAGG CCCTGGGCTT GTCGAAATCG
CTACTCAGCG AGCAGTTGCG ACGCCTGGAG GCCGACCTCG GGATCCAGTT GCTGACCCGT
ACCACCCGTC GCATGACCCT TACCGATCGC GGCGAACTGC TGTTCGGCGT GGCCCAGCGC
ATGCTCGGCG AGCTGGACGG CGCGCTCTCC GATGTGCGCG ACTTGCAGGG CGAGCCCAGT
GGCCGGTTGC GCATCACCGC GCCGCAGGAC TTCGTCAAGT GGCACATCAG CAGCGTTTCC
GCGGCGTTCA TCCGGCAGTT TCCCAAGGTC CAGGTGGAAA TGCTGGCCGA TGACCAGTTC
AGCGATCTGG TCGGCCAGCG CATCGATCTC GCGGTACGTA TCGGCTGGCC GCGCGACTCC
GGCCTGCATG CCAGCAAGCT GTGCGACTTC CAGCAGGTTG CCGTGGCGAC GCCGGGATAC
CTCGCCGGCC TGCCGCCGGT GCTCCAGCCG CACGACCTGG CGCGTTGCGA ATGGATCGGC
CATACCCGCC TGAGCACGCC CTGGACCTGG ACCTTCGAAC GCCAGCGCGA GCGTGCCACG
GTACAGACCC GAGGGCGCCT GCTGGCGAAC AACACCCTGG CGGTGTACCG CCTGGTGCTC
GACGGTGCCG GCGTCAGCGT GCTGCCGAGC TTCCTGGTAG CCCGCGAGAT CGCCCGCGGA
CGGCTGGTCC GACTGCTGCC CGGTTGGCGC CTGCCGCAGG GCGGCATCTA TGCCCTGTAC
CCCTCGGCGC GCTACATGCC GGTGCGGGTC AGGGCGTTCA TCGAGTCGCT GCGCGAGCAT
CTCGGTCGCG AGCCGTTCCG CCTGGCGCAG GGCGAATGA
|
|---|
| Protein sequence | MSAALERLNH LNLNHLYAFV AVAEHNSFTA AAEALGLSKS LLSEQLRRLE ADLGIQLLTR
TTRRMTLTDR GELLFGVAQR MLGELDGALS DVRDLQGEPS GRLRITAPQD FVKWHISSVS
AAFIRQFPKV QVEMLADDQF SDLVGQRIDL AVRIGWPRDS GLHASKLCDF QQVAVATPGY
LAGLPPVLQP HDLARCEWIG HTRLSTPWTW TFERQRERAT VQTRGRLLAN NTLAVYRLVL
DGAGVSVLPS FLVAREIARG RLVRLLPGWR LPQGGIYALY PSARYMPVRV RAFIESLREH
LGREPFRLAQ GE
|
|---|
| |