| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_34010 |
|---|
| Symbol | |
|---|
| ID | 4380430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 3024871 |
|---|
| End bp | 3026664 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639325305 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_790874 |
|---|
| Protein GI | 116050309 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.110029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.162624 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATT CGATTGATGC CGACCTGCTC GACTACTACC AGCGCGAGCT GACCTGGCTA
CGGCACGCCG GCGGCGCCTT CGCCGAGCGC TATCCGAAGG TCGCCCGGCG CCTGCAACTG
GCCCCCGGCG AATGCCCCGA CCCGCACGTC GAGCGTCTGC TGGAAGGTTT CTCGCTGCTC
ACCGCGCGCC TGCAACGGCG CCTCGACGAC GACTACGCAG AGTTCAGCGA CGCCCTCCTC
GAACAGCTCT ACCCCCTGGC GCTGCGCCCG CTGCCGTCCT GCGCGATCGT CCAGTTCGAA
CCGGACCCGA CCCAGGGCAA CCTCGCCGAG GGCTACCGGC TGCCGCGCGA CACCGCGCTG
TTCGTCACCA CCCGTGGCGG CGACAGCGTG CATTTCCGCA GCAGCGCCGA GGCGACCCTG
TGGCCGCTGG CGATCGACGA GGCGACCCTG CTCGGCGGCG AGGAGGCACA AGCCCTGACC
GGAGTCGGCG CCGCCCGCTC GGCGTTGCGC CTGAGCCTGC GCTGCCTGGG CGAGTACCGC
TGGGACGAAC TGTCGATCGA GCGCCTGCGC ATCCACCTGG CGGCTTCGCC GATGGGCTGC
GCGATCCTCT ACGACCTGCT CGCCGCGCAT GCCGTGCAGG TCATGGCGGG GGCGCCCGGC
ACGCCGCCGG CGGCGCTCCG CGGACTGCCG GAGATCGTCG GCTTCGCCGC CGACGAGGCG
CTGCTGCCGG AGGAAGACGG CGGACATCCG GGCCTGCGCC TGCTCGCCGA GTACTTCGCC
TTCCCCGACA AGTTCCACTT CTTCGACCTG CCGCTGTCCG GCGCGCTCGC CGACGGACAG
ACGCTCTACC TGTACCTGGT CTTCGATCGC GCACCGACGG CACGCCTGCA TTTGCAGGCG
GAAGACTTCC AGCTCGGCTG CGCGCCGGCG ATCAACCTCT TTCCGCGGAC CTCGGAGCCG
CTGCGCCCGG ACGGCACCCG CAGCGAGTAC CGCCTGGTCG CCGACAGTCA CCGCGAGAAC
AGCGTGGAAA TCCATAGCAT CCGCGCCGTG CGCTCGGTTG CCGGGAGCAC CGTGCAGCCA
GTCCCGGCCT ACTATGGCTG CCGCCACGAC AGCCACCTCG GCACGCTCTA CTGGCACGCC
CGGCGCATCG CCGGGCTGAC CCCGAACCGG CTGGGCAGCG ACCTGCTGCT GAGCCTGGTG
GATACCGGCT TCGACCCGTT GCGCGAGGCC CCGGCCTTCA GCCTGACCGC CGAGCTGCTA
TGCACCAATC GCTATCTGGC CGAGCGCCTG GGTGCCGGCA CCGCGCTGGG CTTCGAACGG
CCCGGGCCGG TCGCCGCCGC ACGCCTGCGC AACGCGCCCA GCGCGCAGAG CCAGCCGCGC
CTGGACGGCC AGTCGCGCTG GAGACTGGTC TCGCAGCTGA CCCTCAACCA CCTCTCGCTG
GTGGAAGGTC CGCGCGCCCT CGAAGCCCTG CGGGAAATCC TCGCCCTGCA CAACCTGCGC
GACGACGCCA GCGCCCGCCG GCAGATAGAA GGGCTGCGGC AACTCGACTG CCAGCGGGTG
GTGGCGCACG TCGGCGAGGA TGCCTGGCGC GGCTGGCGCA ATGGCCTGGA AATCCGCCTG
CGACTCGATC CGCAACACTT CGTCGGCGCC AGCGGCGTGC TGTTCTCCGC CGTGCTGGCG
CAGTTCTTCT CGCTGTATGC CACCGCCAAC CGCTTCGTGC GCACGGTCCT GGTGGAAGCC
GACAAGGAGG TGAAGACATG GCAACCCCAG GCCGGCTCGC CGCTCTCCCT CTGA
|
|---|
| Protein sequence | MSDSIDADLL DYYQRELTWL RHAGGAFAER YPKVARRLQL APGECPDPHV ERLLEGFSLL
TARLQRRLDD DYAEFSDALL EQLYPLALRP LPSCAIVQFE PDPTQGNLAE GYRLPRDTAL
FVTTRGGDSV HFRSSAEATL WPLAIDEATL LGGEEAQALT GVGAARSALR LSLRCLGEYR
WDELSIERLR IHLAASPMGC AILYDLLAAH AVQVMAGAPG TPPAALRGLP EIVGFAADEA
LLPEEDGGHP GLRLLAEYFA FPDKFHFFDL PLSGALADGQ TLYLYLVFDR APTARLHLQA
EDFQLGCAPA INLFPRTSEP LRPDGTRSEY RLVADSHREN SVEIHSIRAV RSVAGSTVQP
VPAYYGCRHD SHLGTLYWHA RRIAGLTPNR LGSDLLLSLV DTGFDPLREA PAFSLTAELL
CTNRYLAERL GAGTALGFER PGPVAAARLR NAPSAQSQPR LDGQSRWRLV SQLTLNHLSL
VEGPRALEAL REILALHNLR DDASARRQIE GLRQLDCQRV VAHVGEDAWR GWRNGLEIRL
RLDPQHFVGA SGVLFSAVLA QFFSLYATAN RFVRTVLVEA DKEVKTWQPQ AGSPLSL
|
|---|
| |