Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_33260 |
Symbol | pvdS |
ID | 4380513 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 2910054 |
End bp | 2910617 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639325241 |
Product | extracytoplasmic-function sigma-70 factor |
Protein accession | YP_790810 |
Protein GI | 116050373 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.00268823 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.037283 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGAAC AACTGTCTAC CCGCAGATGC GATACCCCGC TCCTCCAGGC ATTCGTCGAT AACCGTACGA TCCTGGTGAA GATCGCCGCC CGCATTACCG GTTGCCGCTC GCGAGCCGAA GATGTGGTCC AGGATGCGTT CTTCAGGCTC CAGTCGGCGC CGCAGATCAC TTCGTCGTTC AAGGCACAGC TCAGCTACCT GTTCCAGATC GTCCGCAACC TGGCCATCGA TCACTACCGC AAGCAGGCGC TCGAACAGAA ATACTCGGGG CCGGAGGAAG AAGGCCTGAA CGTGGTGATC CAGGGCGCCT CGCCGGAAAC CTCGCACATC AACTACGCGA CCCTCGAACA CATCGCGGAT GCCCTCACCG AGCTGCCCAA GCGCACCCGC TACGCCTTCG AGATGTACCG CCTGCACGGC GTGCCGCAGA AGGACATCGC CAAGGAACTG GGCGTCTCGC CGACCCTGGT CAACTTCATG ATCCGCGACG CCCTGGTGCA CTGCCGCAAG GTCACCGCCG AGCGCCAGGG CGACAACGTC ACCCATCTCA GCGCCCGTCG CTGA
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Protein sequence | MSEQLSTRRC DTPLLQAFVD NRTILVKIAA RITGCRSRAE DVVQDAFFRL QSAPQITSSF KAQLSYLFQI VRNLAIDHYR KQALEQKYSG PEEEGLNVVI QGASPETSHI NYATLEHIAD ALTELPKRTR YAFEMYRLHG VPQKDIAKEL GVSPTLVNFM IRDALVHCRK VTAERQGDNV THLSARR
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