Gene PA14_33260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_33260 
SymbolpvdS 
ID4380513 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp2910054 
End bp2910617 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content63% 
IMG OID639325241 
Productextracytoplasmic-function sigma-70 factor 
Protein accessionYP_790810 
Protein GI116050373 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.00268823 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.037283 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGAAC AACTGTCTAC CCGCAGATGC GATACCCCGC TCCTCCAGGC ATTCGTCGAT 
AACCGTACGA TCCTGGTGAA GATCGCCGCC CGCATTACCG GTTGCCGCTC GCGAGCCGAA
GATGTGGTCC AGGATGCGTT CTTCAGGCTC CAGTCGGCGC CGCAGATCAC TTCGTCGTTC
AAGGCACAGC TCAGCTACCT GTTCCAGATC GTCCGCAACC TGGCCATCGA TCACTACCGC
AAGCAGGCGC TCGAACAGAA ATACTCGGGG CCGGAGGAAG AAGGCCTGAA CGTGGTGATC
CAGGGCGCCT CGCCGGAAAC CTCGCACATC AACTACGCGA CCCTCGAACA CATCGCGGAT
GCCCTCACCG AGCTGCCCAA GCGCACCCGC TACGCCTTCG AGATGTACCG CCTGCACGGC
GTGCCGCAGA AGGACATCGC CAAGGAACTG GGCGTCTCGC CGACCCTGGT CAACTTCATG
ATCCGCGACG CCCTGGTGCA CTGCCGCAAG GTCACCGCCG AGCGCCAGGG CGACAACGTC
ACCCATCTCA GCGCCCGTCG CTGA
 
Protein sequence
MSEQLSTRRC DTPLLQAFVD NRTILVKIAA RITGCRSRAE DVVQDAFFRL QSAPQITSSF 
KAQLSYLFQI VRNLAIDHYR KQALEQKYSG PEEEGLNVVI QGASPETSHI NYATLEHIAD
ALTELPKRTR YAFEMYRLHG VPQKDIAKEL GVSPTLVNFM IRDALVHCRK VTAERQGDNV
THLSARR