| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_32390 |
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| Symbol | mexF |
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| ID | 4382681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 2814154 |
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| End bp | 2817342 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639325174 |
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| Product | RND multidrug efflux transporter MexF |
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| Protein accession | YP_790743 |
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| Protein GI | 116050438 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.119837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTCT CCCAATTCTT CATCCAGCGG CCGATCTTCG CCGCGGTGCT GTCGCTGCTG
ATCCTGATCG GCGGCGCCAT CTCCCTGTTC CAGCTACCGA TCAGCGAATA CCCGGAAGTG
GTGCCGCCGA CCGTCGTGGT CCGCGCCAAC TTCCCCGGCG CCAACCCGAA AGTCATCGGC
GAGACCGTCG CCTCTCCCCT TGAACAGGCG ATCACCGGGG TGGAGAACAT GCTCTACATG
TCCTCCCAGT CGACCTCCGA CGGCAAGCTG ACCCTGACCA TCACCTTCGC CCTCGGCACC
GACCTGGACA ACGCCCAGGT GCAGGTGCAG AACCGCGTCA CCCGGACCGA GCCGAAGCTC
CCGGAAGAAG TGACCCGGCT CGGCATCACC GTCGACAAGG CCTCGCCCGA CCTGACCATG
GTCGTGCACC TGACCTCGCC GGATAACCGC TACGACATGC TCTACCTGTC GAACTACGCG
GTGCTCAACG TGAAGGACGA ACTGGCCCGC CTCGACGGCG TCGGCGACGT CCAGTTGTTC
GGCCTCGGCG ACTATTCGCT GCGCGTCTGG CTGGACCCGA ACAAGGTCGC CTCGCGCAAC
CTCACCGCCA CCGACGTGGT CAACGCCATC CGCGAGCAGA ACCGCCAGGT CGCCGCCGGC
ACCCTGGGCG CGCCGCCGGC GCCGAGCGAT ACCAGCTTCC AGTTGTCGAT CAACACCCAG
GGGCGCCTGG TCACCGAGGA AGAGTTCGAG AACATCATCA TCCGCGCCGG CGCCAACGGC
GAGATCACCC GTCTGCGCGA CATCGCCCGG GTCGAGCTGG GCTCCAACCA GTACGCCCTG
CGTTCGCTGC TGAACAACAA GCCGGCGGTG GCGATCCCGA TCTTCCAGCG TCCCGGCTCG
AACGCCATCG AAATCTCCAA CCTGGTGCGG GAGAAGATGG CCGAGCTGAA GCACAGCTTC
CCGCAGGGCA TGGACTACTC CATCGTCTAC GACCCGACCA TCTTCGTCCG CGGCTCCATC
GAGGCGGTGG TGCACACCCT GTTCGAAGCC CTGGTGCTGG TGGTGCTGGT GGTGATCCTG
TTCCTGCAGA CCTGGCGCGC CTCGATCATC CCGCTGGCCG CGGTGCCGGT GTCGCTGATC
GGCACCTTCG CGGTGATGCA CATGCTCGGC TTCTCGCTCA ACGCGCTGTC GCTGTTCGGC
CTGGTGCTGG CCATCGGCAT CGTGGTGGAC GACGCCATCG TGGTGGTGGA GAACGTCGAG
CGCAACATCG GCCTCGGCCT CAAGCCGGTG GAAGCCACCA AGCGTGCCAT GCGCGAGGTG
ACCGGGCCGA TCATCGCCAC GGCGCTGGTG CTCTGCGCGG TGTTCATCCC GACCGCGTTC
ATCTCCGGCC TCACCGGGCA GTTCTACCGC CAGTTCGCCC TGACCATCGC GATCTCCACG
GTGATCTCGG CGTTCAACTC GCTGACCCTG TCGCCAGCGC TGGCGGCGGT CCTGCTCAAG
GGCCACCACG AGCCGAAGGA CCGCTTCTCG GTGTTCCTCG ACAAGCTCCT CGGCAGTTGG
CTGTTCCGTC CGTTCAACCG TTTCTTCGAC CGCGCCAGCC ATGGCTACGT CGGCACGGTG
AACCGGGTCC TGCGCGGCAG CTCGATCGCC CTGCTGGTCT ACGGCGGGCT GATGGTGCTG
ACCTACTTCG GCTTCTCCAG CACGCCGACC GGTTTCGTCC CGCAGCAGGA CAAGCAGTAC
CTGGTGGCCT TCGCCCAGTT GCCCGACGCG GCCAGCCTGG ACCGTACCGA GGCGGTGATC
AAGCAGATGT CCGAGATCGC CCTGGCGCAG CCCGGCGTGG CGGACTCGGT GGCCTTCCCC
GGCCTGTCGA TCAACGGCTT CACCAACAGC CCGAACAGCG GCATCGTGTT CACCCCGCTG
AAGCCGTTCG ACGAGCGCAA GGACCCGAGC CAGTCGGCCG GGGCCATCGC CGCCGCGCTG
AACGCCAAGT ACGCCGACAT CCAGGACGCC TACATCGCGA TCTTCCCACC GCCGCCGGTA
CAGGGGCTGG GGACCATCGG CGGCTTCCGC CTGCAGATCG AGGACCGTGG CAACCAGGGC
TACGAGGAGC TGTTCAAGCA GACCCAGAAC ATCATCACCA AGGCCCGTGC GCTGCCTGAG
CTGGAACCCA GCTCGGTGTT CTCCAGCTAC CAGGTCAACG TGCCGCAGAT CGACGCCGAC
ATCGACCGCG AGAAGGCCAA GACCCACGGC GTGGCGATCA GCGACATCTT CGACACCCTG
CAGGTCTACC TCGGCTCGCT GTACGCGAAC GACTTCAACC GCTTCGGCCG TACCTACCAG
GTCAACGTCC AGGCCGAGCA GCAGTTCCGC CTCGAACCCG AGCAGATCGG CCAGTTGAAG
GTGCGCAACA ACCTCGGCGA GATGGTCCCG CTGGCGTCCT TCATCAAGGT CAGCGACACC
TCCGGTCCGG ACCGTGTGAT GCACTACAAC GGCTTCATCA CCGCCGAACT CAACGGCGCC
CCGGCCGCGG GCTACAGCTC CGGCCAGGCG CAGGCGGCGA TCGAGAAGCT GCTGAAGGAG
GAACTGCCCA ACGGCATGAC CTACGAGTGG ACCGAGCTGA CCTACCAGCA GATCCTCGCC
GGCAATACCG CGCTGTTCGT CTTCCCGCTC TGCGTGCTGC TGGCCTTCCT CGTGCTGGCC
GCCCAGTACG AGAGCTGGAG CCTGCCGCTG GCGGTGATCC TGATCGTGCC GATGACCCTG
CTGTCGGCGA TCACCGGGGT GATCCTGGCC GGCAGCGACA ACAACATCTT TACCCAGATC
GGCCTGATCG TTCTGGTGGG GCTGGCGTGC AAGAACGCGA TCCTGATCGT CGAGTTCGCC
AAGGACAAGC AGGAGGAAGG CATGGACCGC GTCGCCGCGG TGCTGGAAGC CTGCCGCCTG
CGCCTGCGGC CGATCCTGAT GACGTCCATC GCCTTCATCA TGGGCGTGGT GCCGCTGGTG
ATCTCCACCG GCGCCGGCGC CGAGATGCGC CATGCGATGG GCGTGGCGGT GTTCTCCGGG
ATGATCGGGG TGACCTTCTT CGGCCTGCTG CTGACGCCGG TGTTCTACGT CCTCATCCGC
CGCTTCGTGG AGAACCGCGA AGCGCGCCGC GCCGCCAACG ACAAAGGCCT GCCAGAGGTG
CATGCATGA
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| Protein sequence | MNFSQFFIQR PIFAAVLSLL ILIGGAISLF QLPISEYPEV VPPTVVVRAN FPGANPKVIG
ETVASPLEQA ITGVENMLYM SSQSTSDGKL TLTITFALGT DLDNAQVQVQ NRVTRTEPKL
PEEVTRLGIT VDKASPDLTM VVHLTSPDNR YDMLYLSNYA VLNVKDELAR LDGVGDVQLF
GLGDYSLRVW LDPNKVASRN LTATDVVNAI REQNRQVAAG TLGAPPAPSD TSFQLSINTQ
GRLVTEEEFE NIIIRAGANG EITRLRDIAR VELGSNQYAL RSLLNNKPAV AIPIFQRPGS
NAIEISNLVR EKMAELKHSF PQGMDYSIVY DPTIFVRGSI EAVVHTLFEA LVLVVLVVIL
FLQTWRASII PLAAVPVSLI GTFAVMHMLG FSLNALSLFG LVLAIGIVVD DAIVVVENVE
RNIGLGLKPV EATKRAMREV TGPIIATALV LCAVFIPTAF ISGLTGQFYR QFALTIAIST
VISAFNSLTL SPALAAVLLK GHHEPKDRFS VFLDKLLGSW LFRPFNRFFD RASHGYVGTV
NRVLRGSSIA LLVYGGLMVL TYFGFSSTPT GFVPQQDKQY LVAFAQLPDA ASLDRTEAVI
KQMSEIALAQ PGVADSVAFP GLSINGFTNS PNSGIVFTPL KPFDERKDPS QSAGAIAAAL
NAKYADIQDA YIAIFPPPPV QGLGTIGGFR LQIEDRGNQG YEELFKQTQN IITKARALPE
LEPSSVFSSY QVNVPQIDAD IDREKAKTHG VAISDIFDTL QVYLGSLYAN DFNRFGRTYQ
VNVQAEQQFR LEPEQIGQLK VRNNLGEMVP LASFIKVSDT SGPDRVMHYN GFITAELNGA
PAAGYSSGQA QAAIEKLLKE ELPNGMTYEW TELTYQQILA GNTALFVFPL CVLLAFLVLA
AQYESWSLPL AVILIVPMTL LSAITGVILA GSDNNIFTQI GLIVLVGLAC KNAILIVEFA
KDKQEEGMDR VAAVLEACRL RLRPILMTSI AFIMGVVPLV ISTGAGAEMR HAMGVAVFSG
MIGVTFFGLL LTPVFYVLIR RFVENREARR AANDKGLPEV HA
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