| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_31890 |
|---|
| Symbol | |
|---|
| ID | 4383024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 2773332 |
|---|
| End bp | 2776463 |
|---|
| Gene Length | 3132 bp |
|---|
| Protein Length | 1043 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639325141 |
|---|
| Product | putative RND efflux transporter |
|---|
| Protein accession | YP_790710 |
|---|
| Protein GI | 116050471 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0910827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCGT CCCGCCCGTT CATCCTGCGG CCGGTCGCGA CCACCCTGCT GATGGTGGCG
ATCCTGCTCT CGGGCCTGAT CGCCTACCGC TTCCTGCCGA TCTCGGCGTT GCCGGAAGTG
GACTACCCGA CCATCCAGGT GGTCACCCTG TACCCCGGTG CCAGCCCGGA GATCATGACC
TCGTCGATCA CCGCGCCGCT GGAGAACCAG CTCGGGCAGA TTCCGGGGCT CAACGAGATG
TCTTCCAGCA GTTCCGGCGG CGCCTCGGTG ATCACCCTGC AATTCAGCCT GCAGAGCAAC
CTCGATGTCG CCGAGCAGGA AGTCCAGGCG GCGATCAACG CCGCGCAGAG CCTGCTGCCC
AACGACCTGC CGAACCAGCC GGTGTTCAGC AAGGTGAACC CGGCGGACGC ACCGATCCTG
ACCCTGGCGG TGATGTCCGA TGGCATGCCG CTGCCGCAGA TCCAGGACCT GGTGGATACC
CGCCTGGCAC AGAAGATCTC GCAGATCTCC GGGGTCGGCC TGGTCAGCAT CAGCGGCGGC
CAGCGTCCGG CGGTGCGGGT GCGCGCCAAC CCGACGGCGC TGGCGGCGGC CGGGCTGAGC
CTGGAGGACC TGCGCAGCAC GGTGACCAGC AACAACCTCA ACGGCCCCAA GGGCAGCTTC
GACGGCCCGA CCCGTGCCTC GACCCTGGAC GCCAACGACC AGTTGCGCTC GGCCGACGCC
TACCGCGACC TGATCATCGC CTACAAGAAC GGCTCGCCGC TGCGCATCCG CGACGTCGCC
AGCGTCGAGG ACGACGCCGA GAACGTGCGC CTGGCCGCCT GGGCCAACAA CCTGCCGGCG
GTGGTGCTGA ACATCCAGCG CCAGCCGGGG GCCAACGTGA TCGAGGTGGT CGACCGGATC
AAGGCGCTGC TGCCGCAGCT GCAATCGACC CTGCCGGGGA ATCTCGACGT GCAGGTGCTG
ACCGACCGCA CCACCACCAT CCGCGCCTCG GTCAAGGACG TGCAGTTCGA GCTGGCGCTG
GCGGTGGCGC TGGTGGTGAT GGTCACCTTC CTGTTCCTGC GCAACGTCTA CGCCACCCTG
ATTCCCAGCT TCGCCGTGCC GCTGTCGCTG ATCGGCACCT TCGGCGTGAT GTACCTGTCC
GGCTTCTCGA TCAACAACCT GACCCTGATG GCGCTGACCA TCGCCACCGG CTTCGTGGTC
GACGACGCGA TCGTCATGGT GGAGAACATC GCCCGCTACC TGGAGCAGGG CGACTCGCCG
CTGGAAGCGG CGCTCAAGGG CTCGAAGCAG ATCGGCTTCA CCATCATCTC GCTGACCTTC
TCGCTGATCG CCGTGCTGAT CCCGCTGCTG TTCATGGGCG ACGTCGCCGG GCGGCTGTTC
CGCGAGTTCG CCATCACCCT GGCGGTGGCG ATCCTGATTT CCGGCTTCGT CTCCCTGACC
CTTACGCCGA TGCTCAGCGC CAAGCTGCTG CGCCACATCG ACGAGGACCA GCAGGGCCGC
TTCGCGCGCG CCGCGGGGCG GGTCATCGAT GGCCTGATCG CACAATACGC CAAGGCCCTG
CGGGTGGTCC TGCGGCACCA GCCGCTGACC CTGCTGGTGG CCATCGCCAC CCTGGCGCTG
ACCGCGCTGC TCTACCTGGC CATGCCCAAG GGCTTCTTCC CGGTGCAGGA CACCGGAGTG
ATCCAGGGCG TCGCCGAAGC GCCGCAGTCG ATCTCCTTCC AGGCCATGTC CGAGCGCCAG
CGCGCCCTTG CCGAGGTGGT GCTGAAGGAC CCGGCGGTGG CCAGCCTGTC CTCCTACATC
GGCGTCGACG GCAGCAACCC GACCCTCAAC ACCGGCCGCC TGCTGATCAA CCTCAAGCCG
CACAGCGAGC GCGACGTCAC CGCCAGCGAA GTGATCCAGC GCCTGCAGCC CGAACTCGAC
CATCTGCCCG GGATCAAGCT GTACATGCAG CCGGTGCAGG ACCTGACCAT CGAGGACCGG
GTCGCCCGCA CCCAGTACCA GTTCACCTTG CAGGACGCCG ACCCGGACGT GCTCGCCGAG
TGGGTGCCGA AGCTGGTGGC GCGGCTGCAG GAGTTGCCGC AGCTCGCCGA CGTCGCCAGC
GACTGGCAGG ACAAGGGCTT GCAGGCCTAC CTGAACATCG ACCGCGACAC CGCATCGCGC
CTCGGCGTGA AGCTCTCCGA CATCGACAGC GTGCTCTACA ACGCCTTCGG CCAGCGGCTG
ATCTCGACCA TCTTCACCCA GGCCACCCAG TACCGCGTGG TGCTGGAGGT GGCGCCGCAG
TTCCAGCTCG GCCCGCAGGC CCTGGAGCAG CTCTACGTGC CGTCCAGCGA CGGCACCCAG
GTGCGCCTGT CGAGCCTGGC GAAGGTGGAG GAGCGGCATA CCCTGCTGGC GATCAACCAT
ATCGCCCAGT TCCCCTCGGC GACCCTGTCG TTCAACCTGG CCAAGGGTTA CTCCCTGGGC
GAGGCGGTCG AGGCGATCCG TGGCGTCGAG GCCAGCCTGG AGCTGCCGCT GAGCATGCAG
GGCAGCTTCC GCGGCGCGGC GCTGGCCTTC GAGGCCTCGC TGTCGAACAC GCTGCTGCTG
ATCCTCGCCT CGGTGGTGAC CATGTACATC GTCCTGGGCA TCCTCTACGA GAGCTTCATC
CATCCGGTGA CCATCCTCTC GACCCTGCCC TCGGCCGGGG TCGGCGCGCT GCTGGCGCTG
ATGCTGGCGG GGCAGGAGAT CGGCATCGTG GCGATCATCG GCATCATCCT GCTGATCGGC
ATCGTCAAGA AGAACGCGAT CATGATGATC GACTTCGCCC TCGACGCCGA GCGCAACGAA
GGCAAGCCGC CCCATGAGGC GATCTACCAG GCCTGCCTGC TGCGCTTCCG GCCGATCCTG
ATGACCACCA TGGCCGCGCT GCTCGGCGCG CTGCCGCTGA TGCTCGCCGG CGGCGCCGGC
GCCGAGCTGC GCCAGCCGCT GGGCATCACC ATGGTCGGTG GCCTGCTGCT GAGCCAGGTC
CTGACCCTGT TCACCACCCC GGTGATCTAT CTCTACTTCG ACCGCCTGGC CCGTCGCTGG
GCGGCCTGGC GCAAGCAGCG CGGGCTGGAC CTGAACACCG AGGCCGGGTT CGACGGGGAT
GCCGGGCGAT GA
|
|---|
| Protein sequence | MNPSRPFILR PVATTLLMVA ILLSGLIAYR FLPISALPEV DYPTIQVVTL YPGASPEIMT
SSITAPLENQ LGQIPGLNEM SSSSSGGASV ITLQFSLQSN LDVAEQEVQA AINAAQSLLP
NDLPNQPVFS KVNPADAPIL TLAVMSDGMP LPQIQDLVDT RLAQKISQIS GVGLVSISGG
QRPAVRVRAN PTALAAAGLS LEDLRSTVTS NNLNGPKGSF DGPTRASTLD ANDQLRSADA
YRDLIIAYKN GSPLRIRDVA SVEDDAENVR LAAWANNLPA VVLNIQRQPG ANVIEVVDRI
KALLPQLQST LPGNLDVQVL TDRTTTIRAS VKDVQFELAL AVALVVMVTF LFLRNVYATL
IPSFAVPLSL IGTFGVMYLS GFSINNLTLM ALTIATGFVV DDAIVMVENI ARYLEQGDSP
LEAALKGSKQ IGFTIISLTF SLIAVLIPLL FMGDVAGRLF REFAITLAVA ILISGFVSLT
LTPMLSAKLL RHIDEDQQGR FARAAGRVID GLIAQYAKAL RVVLRHQPLT LLVAIATLAL
TALLYLAMPK GFFPVQDTGV IQGVAEAPQS ISFQAMSERQ RALAEVVLKD PAVASLSSYI
GVDGSNPTLN TGRLLINLKP HSERDVTASE VIQRLQPELD HLPGIKLYMQ PVQDLTIEDR
VARTQYQFTL QDADPDVLAE WVPKLVARLQ ELPQLADVAS DWQDKGLQAY LNIDRDTASR
LGVKLSDIDS VLYNAFGQRL ISTIFTQATQ YRVVLEVAPQ FQLGPQALEQ LYVPSSDGTQ
VRLSSLAKVE ERHTLLAINH IAQFPSATLS FNLAKGYSLG EAVEAIRGVE ASLELPLSMQ
GSFRGAALAF EASLSNTLLL ILASVVTMYI VLGILYESFI HPVTILSTLP SAGVGALLAL
MLAGQEIGIV AIIGIILLIG IVKKNAIMMI DFALDAERNE GKPPHEAIYQ ACLLRFRPIL
MTTMAALLGA LPLMLAGGAG AELRQPLGIT MVGGLLLSQV LTLFTTPVIY LYFDRLARRW
AAWRKQRGLD LNTEAGFDGD AGR
|
|---|
| |