| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_30850 |
|---|
| Symbol | |
|---|
| ID | 4385912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 2678435 |
|---|
| End bp | 2679706 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639325056 |
|---|
| Product | TrbI-like protein |
|---|
| Protein accession | YP_790625 |
|---|
| Protein GI | 116050556 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000000167509 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 5.51965e-22 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG ACGACACCCC CGACCGTGCC GCGCCGCAGG TGGGCAAGGT CGCGCCCGAG
GCGGTGGCGC TGCGCGCGCA GCCGCGCCCG GTCACGCGCC TTAACCGGCG CACGCTGGCG
ATGTTCATGG GCGGCCTGTC GGTCGCCGTG CTGGGTGCGA CCATCTGGTC ATTGCAGCCG
CACCGGCGCG GCGCGGGCGA GCAGACCGAG CTTTACAACG TCGATCGCGT GTCCAAGTCC
GAAGGGCTGG ACGGCCTGCC GGCCGACTAC TCGAAGCTGC CGCAGAAGGT GCCCGAGCTG
GGGCCGCCGC TGCCGGGCGA CCTTGGCCCC GCCATCGTGG CCTCGCAGCA GCCGGTCACG
CCGACCTATG TGCCGCCCGG CCACGACCCC GAGGACGCCT TGCGCAAGGA GGCTGACGCC
GCTGCGGCCT CATCGGTGTT CTTCCGCTCG GGCCAGCAGG GCAATGCCGC AGCGCCAGCC
ACGGCCCAAG CCGCTGCGGC TGCGACTGGC AACGCCTTGG CAGGCTTCGA CCCGCTGGCG
GCTGGGCCTG CCTCGATGGC GGCCCAGCCT GCCGACCCGA CTGCCACGCA GAACCGGCAA
GACCAGAAGG AGGCATTCCT GAAAGGCGGT TCTACGGAAA CCCGCAATTC CGGCAACCTG
CAAATGCCGG CCTCGCCGTA TCAAGTCATG GCCGGGACAG TGATCGCGGC TGCGTTGGTG
ACGGGCATCA AGTCCGACTT GCCGGGCGAC GTGATCGGCA CGGTGACAGA GCCGGTCTAT
GACTCGGCCA CGGGCAAGTT CCTGCTGATC CCGCAGGGAT CGCGCATCCT CGGCAAATAC
AACAGCCAGG TCAGTTACGG GCAGAGTCGC GTGCAGGTGG TGTGGAACCG GATCATCCTG
CCAGACACGT CTTCGCTGAC CATCGACAAC CTGGTGGGTA CCGACCCGGC CGGCTACTCC
GGCCTCGAAG ATGGCGTGGA CTACCACTGG GGCCGCATCG TCGCCGGTGC GGCACTGACG
ACGCTGCTGG GCGTAGGTGC CGAGTTGGCC GCGCCCGAGA ACCGCCAAGA CGGCAACCGC
ATCGTGATCG CGGGGCGCGA CAGCGCCCAA GACAGCATCA ATCAGGTTGG ACAGGAGATG
ACCCGGCGCA ACATGAACAT CCAGCCGACG TTGACCGAAC GGCCGGGCCT GCCGGTGCGG
ATCATCGTCA ACCGCGACTT GGTGCTGCGA CCGTACCAGC CGATGTTCTT CAACCGGGGA
GCGATGCGAT GA
|
|---|
| Protein sequence | MSQDDTPDRA APQVGKVAPE AVALRAQPRP VTRLNRRTLA MFMGGLSVAV LGATIWSLQP
HRRGAGEQTE LYNVDRVSKS EGLDGLPADY SKLPQKVPEL GPPLPGDLGP AIVASQQPVT
PTYVPPGHDP EDALRKEADA AAASSVFFRS GQQGNAAAPA TAQAAAAATG NALAGFDPLA
AGPASMAAQP ADPTATQNRQ DQKEAFLKGG STETRNSGNL QMPASPYQVM AGTVIAAALV
TGIKSDLPGD VIGTVTEPVY DSATGKFLLI PQGSRILGKY NSQVSYGQSR VQVVWNRIIL
PDTSSLTIDN LVGTDPAGYS GLEDGVDYHW GRIVAGAALT TLLGVGAELA APENRQDGNR
IVIAGRDSAQ DSINQVGQEM TRRNMNIQPT LTERPGLPVR IIVNRDLVLR PYQPMFFNRG
AMR
|
|---|
| |