Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_30660 |
Symbol | uvrC |
ID | 4380616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 2656149 |
End bp | 2657975 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639325038 |
Product | excinuclease ABC subunit C |
Protein accession | YP_790609 |
Protein GI | 116050572 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.385406 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.0074174 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGCGCCG TTTTCGACGC GAGCGCCTTC CTCGCTACCT GTAGCAATCG TCCGGGCGTC TACCGCATGT TCGATGCGGA CGCCAAGCTT CTCTACGTGG GCAAGGCGAA GAGCCTGAAG AAGCGCCTGG CCAGCTATTT CCGCAAGTCC GGCCTGGCGC CGAAGACCGC TGCGCTGGTG GCGCGCATCG CCCAGGTGGA AACCACCATC ACCGCCAATG AAACCGAGGC GTTGCTGCTG GAGCAGACGC TGATCAAGGA GTGGCGGCCG CCCTACAACA TCCTGCTGCG GGACGACAAG TCCTATCCCT TCGTGTTCCT CTCCAGCGAG GATGAGTATC CGCGGCTGTC CCTGCACCGT GGCGCGAAGA AGCGCAAGGG GCGTTACTTC GGTCCCTATC CGAGCGCGGG AGCGATCCGC GAGAGCCTCA ACCTGCTGCA GAAGGCGTTT CTCGTCCGCC AGTGCGAGGA CAGCTATTTC CGCAACCGTA CGCGGCCCTG CCTGCAATAC CAGATCAAGC GCTGCAAGGG GCCCTGCGTG GGACTGGTCA GTCCTGAGGA GTACGCCGAG GACGTGCGCC ACTCGGTGAT GTTCCTCGAA GGAAGGAGCA ACGCGCTGGC CGACGAGCTG AACGTCGGCA TGGAGCAGGC GGCGATGCGC CTGGACTTCG AGAAGGCGGC GGAGTTGCGC GACCAGGTGG CGATCCTGCG GCGGGTCCAG GACCAGCAGA GCATGGAAGG TGGCAACGGC GACGTCGACA TCGTCGCCGC CATCGTCACC CCTGGCGGCG CTTGCGTACA CCTGATCAGC GTACGCGGCG GGCGGGTGCT GGGCAGCAAG AACTTCTTCC CGCAGGTCGC GATCGAGGAG GAGGTGGGCG AAGTGCTGCT GGCGTTCCTT GGCCAGTACT ATCTCAGCCA CCAGGAGCGC GACCTGCCGG CGGAGTTGAT CGTCAACGTG ACGCACGAGG ATTTCCCGGT GCTGGTTTCG GCGATCGCCG AAGCGCGAGG CCGCGAACTG GAGATCAGCT ACCGGGTGCG TGGTACCCGC GCCCGCTGGC AGCAACTGGC GGTGACCAAC GCCGAACAGG CCCTGGGCGC ACGCCTGGCC AACCGCCAGC ATGTGGCGGC ACGCTTCGAA GCCCTTGCCG AGGCGCTCGA CCTGGCGGAG CCGCCGCAAC GCCTGGAGTG CTTCGATATC AGTCACTCCA GCGGCGAGGC CACCGTGGCT TCCTGCGTGG TGTTCGGCCC GGAAGGGCCG CTGAAGTCGG ACTATCGCCG CTACAACATC GAAGGCGTCA CGGCCGGCGA CGACTACGCG GCGATGCACC AGGCGCTGAC CCGCCGCTTC AGTCGCCTGA AGGACGGCGA GGGGAAGATG CCCGACATTC TCCTGGTGGA TGGCGGCAAG GGGCAATTGG CCATGGCCCA GGAGGTGCTC CAGGAACTGG CGGTCGCCGG TCTGATCCTG CTCGGCGTGG CCAAGGGCGT GACCCGCAAG CCGGGGCTGG AAACCCTCTA CCTGAACGAT GCCTCCCACG AGTTCACCCT GCCGGCCGAT TCGCCGGCGC TGCACCTGAT CCAGCAGATA CGTGACGAAG CGCACCGTTT CGCCATCACC GGCCACCGTG CGCGGCGCGG CAAGGCACGG CGGACGTCGA CGCTGGAGGA CGTCCCTGGC GTCGGCCCGA AACGTCGGCG CGATCTGCTC AAGCATTTCG GCGGGTTGCA GGAATTGTCG CGGGCGAGTA TCGATGAACT GGCCAAAGCC CCCGGTATCA GTAAAAAGCT TGCCGAGCAG ATTTATGCCG TCCTGCACAG CGAGTAG
|
Protein sequence | MSAVFDASAF LATCSNRPGV YRMFDADAKL LYVGKAKSLK KRLASYFRKS GLAPKTAALV ARIAQVETTI TANETEALLL EQTLIKEWRP PYNILLRDDK SYPFVFLSSE DEYPRLSLHR GAKKRKGRYF GPYPSAGAIR ESLNLLQKAF LVRQCEDSYF RNRTRPCLQY QIKRCKGPCV GLVSPEEYAE DVRHSVMFLE GRSNALADEL NVGMEQAAMR LDFEKAAELR DQVAILRRVQ DQQSMEGGNG DVDIVAAIVT PGGACVHLIS VRGGRVLGSK NFFPQVAIEE EVGEVLLAFL GQYYLSHQER DLPAELIVNV THEDFPVLVS AIAEARGREL EISYRVRGTR ARWQQLAVTN AEQALGARLA NRQHVAARFE ALAEALDLAE PPQRLECFDI SHSSGEATVA SCVVFGPEGP LKSDYRRYNI EGVTAGDDYA AMHQALTRRF SRLKDGEGKM PDILLVDGGK GQLAMAQEVL QELAVAGLIL LGVAKGVTRK PGLETLYLND ASHEFTLPAD SPALHLIQQI RDEAHRFAIT GHRARRGKAR RTSTLEDVPG VGPKRRRDLL KHFGGLQELS RASIDELAKA PGISKKLAEQ IYAVLHSE
|
| |