| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_25690 |
|---|
| Symbol | fabF1 |
|---|
| ID | 4384346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 2244526 |
|---|
| End bp | 2245770 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639324630 |
|---|
| Product | 3-oxoacyl-(acyl carrier protein) synthase II |
|---|
| Protein accession | YP_790208 |
|---|
| Protein GI | 116050967 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | [TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00000812921 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.772027 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGCGTA GACGCGTCGT CATTACTGGC ATGGGCATGC TGTCGCCGCT GGGCCTGGAT
GTCCCGAGCA GTTGGGAAGG TATTCTCGCC GGTCGCAGCG GGATCGCCCC GATCGAGCAT
ATGGACCTGT CCGCCTATTC CACCCGCTTC GGTGGTTCGG TCAAGGGTTT CAATGTCGAG
GAATACCTGT CCGCCAAGGA AGCCCGCAAG CTCGACCTGT TCATCCAGTA CGGTCTCGCC
GCCAGCTTCC AGGCCGTTCG CGATTCCGGC CTGGAGGTCA CCGACGCCAA TCGTGAGCGT
ATCGGCGTAT CCATGGGTTC CGGTATCGGC GGCCTGACCA ATATCGAGAA CAACTGCCGA
TCCCTGTTCG AGCAGGGGCC GCGGCGCATC TCGCCGTTCT TCGTGCCCGG TTCGATCATC
AACATGGTTT CCGGCTTCCT GTCGATCCAC CTGGGTCTGC AGGGGCCCAA CTACGCCCTC
ACCACCGCCT GCACCACCGG TACCCACAGC ATCGGCATGG CTGCTCGCAA CATCGCCTAT
GGCGAGGCCG ACGTGATGGT CGCCGGCGGT TCCGAAATGG CTGCCTGCGG TCTCGGCCTG
GGCGGTTTCG GCGCGGCTCG CGCGCTCTCC ACTCGCAACG ACGAGCCGAC CCGTGCCAGC
CGTCCGTGGG ACCGGGATCG CGACGGCTTC GTCCTGTCCG ACGGTTCCGG CGCCCTGGTG
CTCGAAGAAC TGGAGCACGC CCGTGCCCGC GGCGCGCGGA TCTATGCCGA GCTGGTTGGC
TTCGGCATGA GCGGCGACGC CTTCCACATG ACCGCGCCGC CGGAAGATGG CGCCGGTGCC
GCCCGCTGCA TGAAGAACGC GCTGCGCGAT GCCGGCCTGG ATCCTCGTCA GGTCGATTAC
ATCAACGCCC ATGGCACCTC CACCCCGGCC GGCGACATCG CCGAGATCGC CGCGGTGAAG
AGCGTGTTCG GCGAGCATGC CCATGCGCTG TCGATGAGTT CGACCAAGTC GATGACCGGC
CACCTGTTGG GTGCCGCCGG TGCGGTGGAG GCGATCTTCA GCGTGCTGGC CCTGCGCGAC
CAGGTCGCCC CGCCGACCAT CAACCTGGAC AACCCGGACG AAGGTTGCGA CCTCGACCTG
GTGGCCCACG AAGCCAAGCC GCGCAAGATC GACGTGGCCC TGTCGAACTC GTTCGGTTTC
GGCGGGACCA ACGGCACCCT GGTGTTCCGC AGGTTCGCCG ACTGA
|
|---|
| Protein sequence | MSRRRVVITG MGMLSPLGLD VPSSWEGILA GRSGIAPIEH MDLSAYSTRF GGSVKGFNVE
EYLSAKEARK LDLFIQYGLA ASFQAVRDSG LEVTDANRER IGVSMGSGIG GLTNIENNCR
SLFEQGPRRI SPFFVPGSII NMVSGFLSIH LGLQGPNYAL TTACTTGTHS IGMAARNIAY
GEADVMVAGG SEMAACGLGL GGFGAARALS TRNDEPTRAS RPWDRDRDGF VLSDGSGALV
LEELEHARAR GARIYAELVG FGMSGDAFHM TAPPEDGAGA ARCMKNALRD AGLDPRQVDY
INAHGTSTPA GDIAEIAAVK SVFGEHAHAL SMSSTKSMTG HLLGAAGAVE AIFSVLALRD
QVAPPTINLD NPDEGCDLDL VAHEAKPRKI DVALSNSFGF GGTNGTLVFR RFAD
|
|---|
| |