| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_25230 |
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| Symbol | mfd |
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| ID | 4381028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 2205023 |
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| End bp | 2208469 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639324592 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_790170 |
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| Protein GI | 116051004 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGTAC TGCGTCTTCC CAGCCTGCCG GCCAGCGCCG GCAAGCAACA CTGGGGCAAC
CTCCCCGGTG CCGCGCTGAG CCTGGCTGTC GCCGAGGCCG CCAGTTCCGC CAAGCGCTTC
ACCTTGCTGC TGACCGCCGA CAGCCAGAAT GCCGAACGCC TGGAACAGGA ACTGCGGTTC
TTCGCCCCCG ACCTGCCGGT ATTGCATTTC CCCGATTGGG AAACCCTGCC CTACGACGTC
TTTTCGCCGC ATCAGGACAT CATTTCCCAG CGCATCGCCG CCCTCTACCA GTTGCCGCAG
CTCAAGCACG GCGTGCTGGT GGTGCCGATC TCCACCGCCT TGCACCGCCT GGCGCCGACC
CGCTTCCTGC TCGGCAGCAG CCTGGTCCTC GACGTCGGCC AGAAACTCGA CGTCGAGCGG
ATGCGCCTGC GCCTGGAAGG CGCCGGCTAC CGCTGCGTCG ACACGGTCTA CGAGCACGGC
GAGTTCGCCG TCCGCGGCGC ACTGATCGAC CTGTTCCCGA TGGGCAGCGA GTTGCCCTTC
CGTATCGACC TGTTCGACGA CGAGATCGAG ACCCTGCGCA CCTTCGACCC GGAGACCCAG
CGCTCCATCG ACAAGGTCGA GTCAATCCGC CTGCTGCCGG CACGCGAATT CCCCCTGAAC
AAGGAAGCGG TCACCGGTTT CCGCGGCCGC TTCCGCGAGC GCTTCGACGT CGACTACCGG
CGCTGCCCGA TCTACCAGGA CCTCGCCAGC GGTTTGACAC CCTCGGGAAT CGAGTACTAC
CTGCCGCTGT TCTTCGAGGA AACCGCGACC CTCTTCGACT ACCTGCCGCA AGACACCCAG
GTGTTCTCCC TGCCCGGCAT CGAACAGGCC GCCGAGCAGT TCTGGAATGA CGTACGCAGC
CGCTACGAGG ACCGCCGGGT CGATCCGGAA CGGCCATTGC TGCCGCCGGC GGAAGTGTTC
CTTCCGGTGG AAGACTGCTT CGCCCGGCTG AAGAACTGGC CACGGGTGGT CGCCAGCCAG
GAGGACGTCG AGCCGGGCGT CGGGCGCGAG CGCTTCCCGG CCCTGCCGCT GCCGAACCTG
GCGATCGAAG CCAAGGCCGC CGAGCCGCTG GCCGCGCTGC GCCGGTTCAT CGAGGAGTTC
CCCGGCCGCG TACTGTTCTG CGCCGAATCG CCCGGACGCC GGGAAGTCCT GCTGGAGCTG
CTGGCCCGAC TGAAGCTGCG CCCCGAGGAA GTCGACGGCT GGCCGGCCTT CCTCGCCAGC
CAGGCACGCC TGGCGATCAG CATCGCGCCG CTGGACGAGG GCCTGCTGCT GGACCATCCG
GCACTCGCCC TGGTCGCCGA AAGCCCGCTG TTCGGCCAGC GCGTCATGCA GCGCCGGCGC
CGGGAAAAGA CCCGCGACGG CGGCGACGCG GTGATCAAGA ACCTCACCGA GCTGCGCGAA
GGCGCGCCGG TGGTGCACAT CGACCATGGC GTCGGCCGCT ACCTGGGCCT GATCACCCTC
GAGGTGGACA ACCAGCAGGC GGAATTCCTC ATGCTGCAAT ACGCCGAGGA CGCCAAACTC
TACGTGCCGG TCGCCAACCT GCACCTGATC GCCCGCTACA CCGGCGCCGA CGACGCCCTG
GCGCCGCTGC ACCGACTCGG CTCGGAAACC TGGCAGAAGG CCAAGCGCAA GGCCGCCGAA
CAGGTTCGCG ACGTCGCCGC CGAACTGCTC GACATCTACG CCCGCCGCGC CGCCCGCGAA
GGCTTCGCGT TCAAGGATCC GCAGGCCGAC TACGCGACCT TCTCGGCCGG CTTCCCGTTC
GAGGAGACGC CGGACCAGCA AAGCGCCATC GAGGCGGTGG TCGCCGACAT GCTCGCGCCC
AGGCCCATGG ACCGCCTGGT CTGCGGCGAC GTCGGCTTCG GCAAGACCGA AGTGGCGATG
CGCGCGGCGT TCGTCGCCGT GCATAGCGGC AAGCAGGTGG CGGTGCTGGT GCCCACCACC
CTGCTCGCCC AGCAGCACTA CAACAGCTTC CGCGACCGCT TCGCCGACTG GCCGGTGAGC
GTCGAGGTGA TGAGCCGCTT CAAGAGCGCC AAGGAAGTCG AGAACGCCGC GCGGCTACTG
GCCGAAGGCA AGATCGACAT CCTCATCGGG ACCCACAAGC TGCTCCAGGA AGACGTGAAG
TTCGCCAACC TGGGGTTGGT CGTGATCGAC GAGGAACACC GCTTCGGGGT GCGCCAGAAG
GAGCAGCTCA AGGCCCTGCG CAGCGAAGTG GATATCCTCA CCCTCACCGC CACGCCGATC
CCGCGGACCC TGAACATGGC CGTCTCCGGC ATGCGCGACC TGTCCATCAT CGCCACGCCG
CCGGCGCGCC GCCTGTCGGT GCGCACCTTC GTCATGGAGC AGCAGAACGC GGTGATCAAG
GAAGCGCTGC TCCGCGAACT GCTGCGCGGC GGCCAGGTGT ACTACCTGCA CAACGAAGTG
AAGACCATCG AGAAGTGCGC CCGCGACCTC GCCGAACTGG TCCCGGAGGC GCGCATCGGC
ATCGGCCACG GACAGATGCA CGAGCGCGAG CTGGAACAGG TGATGAGCGA CTTCTACCAC
AAGCGCTTCA ACGTGCTGGT GGCCTCGACC ATCATCGAGA CCGGCATCGA CGTGCCCAGC
GCCAACACCA TCCTCATCGA GCGCGCCGAC AAGTTCGGCC TGGCCCAGTT GCACCAGTTG
CGCGGCCGCG TCGGTCGCAG CCACCACCAG GCCTACGCCT ACCTGCTGAC ACCGCCGCGC
CGTCAGATGA CCCCGGACGC CGAGAAGCGC CTGGAAGCCA TCGCCAACGC CCAGGACCTG
GGCGCCGGCT TCGTCCTCGC CACCCACGAC CTGGAGATCC GCGGCGCCGG CGAGTTGCTC
GGCGACGGCC AGAGCGGGCA GATCCAGGCG GTCGGCTTCA CCCTCTACAT GGAAATGCTC
GAACGGGCGG TGAAGGCCAT CCGCAAGGGC GAGCAGCCGA ACCTCGAGCA GCCGCTGGGC
GGTGGGCCGG AGGTCAACCT GCGGGTGCCT GCGCTGATCC CCGAGGATTA CCTGCCCGAC
GTGCATGCCC GGCTGATCCT CTACAAGCGC ATCGCCAACG CCCCTGACGA GGAAGGTTTG
CGCGAGTTGC AGGTGGAGAT GATCGACCGC TTCGGGCTCC TGCCCGATCC GGCGAAGAAC
CTGATGCGCC TGACCCTTCT GAAGCTGCAG GCGGAAAAAC TTGGAATCCT CAAGGTCGAT
GCCGGACCGC AGGGCGGTCG TATAGAATTC GCCGCCGATA CCCAGGTCGA CCCGCTGGTA
CTGATCAAGC TGATCCAGGG CCAGCCGAAC CGCTACAAGT TCGAAGGCGC AACCCTGTTC
CGCTTCCAGG TGCCCATGGA ACGACCGGAA GAACGCTTCA ATACCCTGGA GGCGCTGTTC
GAGCGCCTGA CACCGCAAAC CACCTAA
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| Protein sequence | MSVLRLPSLP ASAGKQHWGN LPGAALSLAV AEAASSAKRF TLLLTADSQN AERLEQELRF
FAPDLPVLHF PDWETLPYDV FSPHQDIISQ RIAALYQLPQ LKHGVLVVPI STALHRLAPT
RFLLGSSLVL DVGQKLDVER MRLRLEGAGY RCVDTVYEHG EFAVRGALID LFPMGSELPF
RIDLFDDEIE TLRTFDPETQ RSIDKVESIR LLPAREFPLN KEAVTGFRGR FRERFDVDYR
RCPIYQDLAS GLTPSGIEYY LPLFFEETAT LFDYLPQDTQ VFSLPGIEQA AEQFWNDVRS
RYEDRRVDPE RPLLPPAEVF LPVEDCFARL KNWPRVVASQ EDVEPGVGRE RFPALPLPNL
AIEAKAAEPL AALRRFIEEF PGRVLFCAES PGRREVLLEL LARLKLRPEE VDGWPAFLAS
QARLAISIAP LDEGLLLDHP ALALVAESPL FGQRVMQRRR REKTRDGGDA VIKNLTELRE
GAPVVHIDHG VGRYLGLITL EVDNQQAEFL MLQYAEDAKL YVPVANLHLI ARYTGADDAL
APLHRLGSET WQKAKRKAAE QVRDVAAELL DIYARRAARE GFAFKDPQAD YATFSAGFPF
EETPDQQSAI EAVVADMLAP RPMDRLVCGD VGFGKTEVAM RAAFVAVHSG KQVAVLVPTT
LLAQQHYNSF RDRFADWPVS VEVMSRFKSA KEVENAARLL AEGKIDILIG THKLLQEDVK
FANLGLVVID EEHRFGVRQK EQLKALRSEV DILTLTATPI PRTLNMAVSG MRDLSIIATP
PARRLSVRTF VMEQQNAVIK EALLRELLRG GQVYYLHNEV KTIEKCARDL AELVPEARIG
IGHGQMHERE LEQVMSDFYH KRFNVLVAST IIETGIDVPS ANTILIERAD KFGLAQLHQL
RGRVGRSHHQ AYAYLLTPPR RQMTPDAEKR LEAIANAQDL GAGFVLATHD LEIRGAGELL
GDGQSGQIQA VGFTLYMEML ERAVKAIRKG EQPNLEQPLG GGPEVNLRVP ALIPEDYLPD
VHARLILYKR IANAPDEEGL RELQVEMIDR FGLLPDPAKN LMRLTLLKLQ AEKLGILKVD
AGPQGGRIEF AADTQVDPLV LIKLIQGQPN RYKFEGATLF RFQVPMERPE ERFNTLEALF
ERLTPQTT
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