| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_23390 |
|---|
| Symbol | orfE |
|---|
| ID | 4381149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 2030647 |
|---|
| End bp | 2031909 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 639324439 |
|---|
| Product | putative polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_790024 |
|---|
| Protein GI | 116051145 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000000307585 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.00805893 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGTGA AGCTTAATGA AAACTCTGTA AACGCTTTGT CTTTAGTTGC AATACAGGGC
GCAAATGCAC TGCTTCCATT GTTAGCTTTC CCATATTTGT TTGGCGTATT AGAACAGGGT
GCTTTTGCGA GGCTAGTAGT GGCTGAAGCA TTAGCTTTTT ATGTTTTGAC TGTGTGTCTT
TATAGTTTTG ATATAAGTGG CGTTCAAGTA ATAGTCGATG CGAAAGAGGA AAGAGAGGTA
GAAGCAAAGT TTTTTTTCAA TATATTTGCT GCTAGGGTTG GATTATTAAT TTTTTCTTCT
GTTTTTTTGG TTGGAGGTGG ATATCTATTT TGGGGCGCCG ATGTGTTGTT GGTAGTTATA
TGGCTTTTTT TTGTTTTGGG TATGATTCTT CAGTCTAATT ATTACTTCCA AGCAGTTGAA
AATAACTGGT TGCTGGCAAC ATTTGTAGTC TCTTCAAGAG TTACTGCGGT TTTAGCCGTC
TATGTCTTTG TACATAAGGG GACGGATGTT TTTCTTGCTT CCATCATATT GGCAGGTAGC
TTTTTAGTTT CAGGGGGAGC GGTATTTGGA GTTCTACTTA CTCGTTTTGG TTTGAGTGAA
TTTAAGAGGA TTAGAGGTGA TGTTGTTGTC TCATTACTGT GGAGTGGTCG TCATCTGTTT
CTAGGGAACT TATCAGTTAC TTTATTTCGT GGTGCAAATG TTTTAATTTT GGCTGGTGTT
TCAAATAGTG CTGCTGTTGC AGTTTATGCA CTCTCCGAGA AAATAATTAA AAGTACTCAA
GCACTAGCGA GGCCATTGAA TCAGTTATTT TTGCCAAAAG TTGTAAAAGC TTGGGCCTCT
CTCTCTGAAC GGGAAAGAAA CAACGCCTTT GCTTTTAGAC TTGTCTGGAA AAATACATAT
GCTCAAGTAT TGCTTATGGT TTTCTTTCTT CCGGTTTTTA TCTTTCTCTT ATATTTCTGT
TGGGTTTTAG GAGTGATTCC GGGTTTTAGT GAGAAAGTTT TCTTTCTAAT TGTATTGATG
TCGCCAGCCG TGATTTTTGG TGTTGCTAAT TCTATGTTTG GTGCAGTAGG GCTGAGTTTA
ATCGGAGGGC AAACCTACTT TGCTTATTCT GTTTCTATCA TTGGGGTTTG TGCTTTTTTG
ATTTCCCTGG TTATGTCTTA TCTTCTCTCT GATACCGGGG CTGCGATGAC TTTTGTGCTG
GCGGAGGCTT TGCTTTTATT TGCCTTTCTC TGTAAATATC GTGGGAAGCC AAGACATGGA
TGA
|
|---|
| Protein sequence | MLVKLNENSV NALSLVAIQG ANALLPLLAF PYLFGVLEQG AFARLVVAEA LAFYVLTVCL
YSFDISGVQV IVDAKEEREV EAKFFFNIFA ARVGLLIFSS VFLVGGGYLF WGADVLLVVI
WLFFVLGMIL QSNYYFQAVE NNWLLATFVV SSRVTAVLAV YVFVHKGTDV FLASIILAGS
FLVSGGAVFG VLLTRFGLSE FKRIRGDVVV SLLWSGRHLF LGNLSVTLFR GANVLILAGV
SNSAAVAVYA LSEKIIKSTQ ALARPLNQLF LPKVVKAWAS LSERERNNAF AFRLVWKNTY
AQVLLMVFFL PVFIFLLYFC WVLGVIPGFS EKVFFLIVLM SPAVIFGVAN SMFGAVGLSL
IGGQTYFAYS VSIIGVCAFL ISLVMSYLLS DTGAAMTFVL AEALLLFAFL CKYRGKPRHG
|
|---|
| |