Gene PA14_22980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_22980 
Symbol 
ID4381183 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp1992306 
End bp1993568 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content66% 
IMG OID639324405 
Productputative binding protein component of ABC sugar transporter 
Protein accessionYP_789990 
Protein GI116051179 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.16871 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCGA TCCGTCGCCT CTCTGCCGTC ATCTGTCTTT CCTCCCTCTG TCTCTCCCCG 
CTGCTGGCCC AGGCCGGCGA AGTCGAAGTG CTGCACTGGT GGACCTCCGC CGGCGAGAAG
CGCGCCGCCG AAACCCTGAA GAAGCTGGTC GAAGCCAAGG GCCACACCTG GAAGGACTTC
GCCGTGGCCG GCGGTGGCGG CGAGGCGGCG ATGACGGTGC TGAAGACCCG CGCGGTGTCC
GGCAATCCGC CGGCCGCGGC GCAGATCAAG GGGCCGGATA TCCAGGAGTG GGGCGAACTG
GGCCTGCTCG CCGACCTCAA CGCGGTGGCC GCCGAAGGCA AGTGGGACAG CCTGCTGCCG
AAGCAGGTGG CGCAGATCAT GAAGTACGAC GGCGACTACG TAGCAGTGCC GATCAACGTA
CACCGGGTCA ACTGGCTCTA CATCAACCCG GAAGTGTTCA AGAAGGCCGG CGCCACCCCG
CCGACCACCC TCGACGAACT GTTCGTCGCC GCCGACAAGC TCAAGGCCGC CGGTTTCACG
CCGCTGGCCC ATGGCAGCCA ACCGTGGCAG GACGGCACCG TGTTCGAGAA CCTGGTGCTG
AGCAAGATGG GTCCGGAAGG CTATCGCAAG GCCTTCGTCG AACAGGACAA GGCGACCCTC
ACCGGAGCGC AGATGGTCGA GGTGTTCGCC GCGCTGAAGA AGCTCCGCGG CTACGTCGAT
GCCGACGCCG CCGGTCGCGA ATGGAGCGCC GCCACGGCGA TGGTGATCAA CGGCAAGGCC
GGGATGCAGA TCATGGGCGA CTGGGCGAAG AGCGAATTCA CCGCCGCCGG CAAGGTGCCG
GGCAAGGACT ACCAGTGCCT GCCGTTCCCC GGCACGCAGA AGGCCTTCGA CTACAACATC
GACTCGCTGG TGATGTTCAA GCTGAGCAAC GCGGAGAACC GCAAGGCCCA GGAAGACCTG
GCGCGCAGCG TGCTCGATCC GTCCTTCCAG AAGGACTTCA ACCTCAACAA GGGCTCCATC
CCGGTTCGCC TGGACGCCGA CATGGCGCCG TTCGACAGTT GCGCCCAGCA GTCGATGAAG
GACTTCAAGC AGGCTTCCCA GGACGGCAAC CTGGTGCCGA GCATGGCCCA CAGCATGGCC
GCTTCCAGCT ACGTGCAGGG GGCGATCTTC GACGTGGTGA CCAACTTCTT CAACGACCCC
GCCGCGGACC CGCAGAAGGC CGCCCAGCAA CTGGCGGCCG CCATCGAGGC GGCGGCGCAG
TAA
 
Protein sequence
MNAIRRLSAV ICLSSLCLSP LLAQAGEVEV LHWWTSAGEK RAAETLKKLV EAKGHTWKDF 
AVAGGGGEAA MTVLKTRAVS GNPPAAAQIK GPDIQEWGEL GLLADLNAVA AEGKWDSLLP
KQVAQIMKYD GDYVAVPINV HRVNWLYINP EVFKKAGATP PTTLDELFVA ADKLKAAGFT
PLAHGSQPWQ DGTVFENLVL SKMGPEGYRK AFVEQDKATL TGAQMVEVFA ALKKLRGYVD
ADAAGREWSA ATAMVINGKA GMQIMGDWAK SEFTAAGKVP GKDYQCLPFP GTQKAFDYNI
DSLVMFKLSN AENRKAQEDL ARSVLDPSFQ KDFNLNKGSI PVRLDADMAP FDSCAQQSMK
DFKQASQDGN LVPSMAHSMA ASSYVQGAIF DVVTNFFNDP AADPQKAAQQ LAAAIEAAAQ