Gene PA14_14630 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_14630 
SymbolsecD 
ID4381891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp1247545 
End bp1249407 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content65% 
IMG OID639323723 
Productpreprotein translocase subunit SecD 
Protein accessionYP_789311 
Protein GI116051846 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAACA AGTATCCTCT GTGGAAATAT CTGCTGATCC TGGCGGTCCT CGCCGTCGGG 
TTCATCTATT CCGCACCCAA CCTCTACCCG GACGACCCGG CGGTGCAGAT CAGCGGCGCC
AGCACGGCGC TGCAGGTCAC CCAGGCCGAC GTCGACCGCG CTGCCAAGGC GCTGACCGAC
GCCGGTATCG CGGTGAAGGC CAACAGCCTG TCGAAGAAGG GCGGCCTGAT CCGCCTGGTC
AAGCAGGACG ACCAGCTTCC CGCCAAGGAA GTGGTGCGCC GGACCCTGGG CGACGACTAC
GTGGTGGCGC TGAACCTGGC CCAGACCACT CCCGAGTGGC TGCGCAAGCT GGGCGGCAGC
CCAATGAAGC TCGGCCTGGA CCTGTCCGGC GGCGTGCACT TCCTGCTGGA AGTGGACATG
GACAAGGCGG TCGATGCCCG CCTGAAGGTC TATGAAAGCG AAGTGAAGAG CCTGCTGCGC
AAGGAGCGCG TGCGCTACCG CAGCCTGCCG ATCCAGGATC GCGCGATCCA GCTCGGCTTC
ACCGACAGCG AATCCCTGGA CAAGGCGCGC AGCCTGATCG CCAAGGACTT CCGCGATTTC
GAGGTCGTGC CCGAAGAGCG CAACGGCCTG CAGGTCCTGC GTGTCGCCCT GACCCAGGCC
AAACTGGCGG AAATCCGCGA GTACTCCATC AAGCAGAACC TCACCACCGT CCGCAACCGG
GTCAACGAGC TGGGCGTATC CGAGCCGCTG GTGCAGCGCC AGGGCGCCAA TCGCATCGTG
GTCGAGCTGC CGGGCGTGCA GGACACCGCG GAAGCCAAGC GAATCCTCGG CAAGACCGCC
AACCTCGAAT TCCGCCTGGC CGCCGAGCCG GACGCCCTGA AGTCCGCCAC CGAGACCTTC
GAGTTCCGCG AGCCGCGCCG TCCGCCGGTG CCGCTGGAGC GCGGGGTGAT CATCACCGGC
GACCAGGTCA CCGACGCCAG CGCCAGTTTC GACGAGAACG GCCGCCCGCA GGTGAACATC
CGCCTGGATG GCCACGGCGG CGAGCTGATG AACCGCGCCA CCCGCAACAA CGTCGGCCGC
AGCATGGCGG TGGTGTTCAT CGAGCAGAAG CCGGTGACCC GCTACACCAA GCAGATGGTC
GATGGCGTCG AGAAGGAGGT CGCGGTTCCG GCGTTCAAGG AAGAGAAGCA GATCATCAGT
CTGGCGACCA TCCAGTCGCC GCTGGGCAAC CAGTTCCGCA TCACCGGCCT CGATGGCCCG
GGCGAGTCCT CCGAACTGGC CCTGCTGCTG CGTGCCGGCG GCCTGGCTGC ACCGATGTAC
TTCGCCGAAG AACGCACCAT CGGCCCGAGC CTGGGGGCGG ACAACATCGC CAAGGGTGTC
GATGCGTCGC TCTGGGGCAT GCTCTTCGTA TCGCTGTTCA TCATCGTCAT CTACCGTTTC
TTCGGCGTGA TCGCCACCGT TGCGCTGGCC TTCAACATGG TCATGCTGGT AGCGCTGATG
TCGATCCTCG GCGCGACCCT GACCCTGCCG GGCATCGCCG GTATCGTGCT GACCATGGGC
ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGGATAC GCGAGGAGCT GGCCAATGGC
ATGTCGGTCC AGAGGGCGAT CCACGAAGGC TTCAACCGTG CCTTCACCGC GATCCTCGAC
GCCAACCTGA CCTCGCTGCT GGTCGGCGGC ATCCTCTACG CCATGGGCAC CGGCCCGGTG
AAAGGATTTG CCGTGACCAT GTCGCTCGGC ATCATCACCT CGATGTTCAC GGCCATCATG
GTCACCCGCG CAATGGTCAA CCTGATCTTC GGCGGGCGTG ACTTCAAGAA GCTGTGGATC
TAA
 
Protein sequence
MLNKYPLWKY LLILAVLAVG FIYSAPNLYP DDPAVQISGA STALQVTQAD VDRAAKALTD 
AGIAVKANSL SKKGGLIRLV KQDDQLPAKE VVRRTLGDDY VVALNLAQTT PEWLRKLGGS
PMKLGLDLSG GVHFLLEVDM DKAVDARLKV YESEVKSLLR KERVRYRSLP IQDRAIQLGF
TDSESLDKAR SLIAKDFRDF EVVPEERNGL QVLRVALTQA KLAEIREYSI KQNLTTVRNR
VNELGVSEPL VQRQGANRIV VELPGVQDTA EAKRILGKTA NLEFRLAAEP DALKSATETF
EFREPRRPPV PLERGVIITG DQVTDASASF DENGRPQVNI RLDGHGGELM NRATRNNVGR
SMAVVFIEQK PVTRYTKQMV DGVEKEVAVP AFKEEKQIIS LATIQSPLGN QFRITGLDGP
GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNIAKGV DASLWGMLFV SLFIIVIYRF
FGVIATVALA FNMVMLVALM SILGATLTLP GIAGIVLTMG MAVDANVLIF SRIREELANG
MSVQRAIHEG FNRAFTAILD ANLTSLLVGG ILYAMGTGPV KGFAVTMSLG IITSMFTAIM
VTRAMVNLIF GGRDFKKLWI