Gene PA14_11550 details

Gene Information

• Locus tag: PA14_11550
• Symbol: dxs
• ID: 4382715
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa UCBPP-PA14
• Kingdom: Bacteria
• Replicon accession: NC_008463
• Strand: -
• Start bp: 997819
• End bp: 999702
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 639323486
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_789075
• Protein GI: 116052081
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 63
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCCAAGA CGCTCCATGA GATTCCCCGC GAGCGCCCCG CCACGCCCCT GCTCGACCGC 
GCCTCTTCGC CGGCCGAACT GCGCCGGCTG GGCGAGGCGG ACCTGGAAAC CCTGGCCGAC 
GAGCTGCGCC AGTACCTGCT GTATACCGTC GGGCAGACCG GCGGTCATTT CGGCGCCGGC 
CTCGGCGTGG TCGAGCTGAC CATCGCCCTG CACTACGTCT TCGACACTCC GGACGATCGC 
CTGGTCTGGG ACGTCGGCCA CCAGGCCTAT CCGCACAAGA TCCTCACCGA ACGCCGCGAG 
CTGATGGGCA CCCTGCGCCA GAAGAACGGC CTGGCGGCCT TCCCGCGCCG CGCAGAGAGC 
GAGTACGACA CCTTCGGCGT CGGCCACTCC AGCACCTCCA TCAGCGCCGC CCTGGGCATG 
GCCATCGCCG CCCGCCTGCA AGGCAAGGAG CGTAAGTCGG TGGCCGTGAT CGGCGACGGT 
GCGCTGACCG CCGGCATGGC CTTCGAGGCA CTCAACCACG CCTCGGAAGT CGACGCCGAC 
ATGCTGGTGA TCCTCAACGA CAACGACATG TCGATCTCGC ACAACGTCGG CGGGCTCTCC 
AACTACCTGG CGAAGATCCT CTCCAGCCGC ACCTATAGCA GCATGCGCGA GGGCAGCAAG 
AAGGTGCTCT CGCGCCTGCC CGGGGCCTGG GAGATCGCCC GGCGCACCGA GGAATACGCC 
AAGGGCATGC TGGTCCCCGG CACCCTGTTC GAGGAGCTCG GCTGGAACTA CATCGGCCCG 
ATCGACGGCC ACGACCTGCC GACCCTGGTG GCTACCCTGC GCAACATGCG CGACATGAAG 
GGCCCGCAGT TCCTCCATGT GGTGACCAAG AAAGGCAAGG GCTTCGCCCC GGCCGAACTG 
GATCCGATCG GCTACCACGC GATCACCAAG CTGGAAGCTC CCGGCAGTGC GCCGAAGAAG 
ACCGGCGGAC CCAAGTATTC CAGCGTCTTC GGCCAGTGGC TGTGCGACAT GGCCGCCCAG 
GACGCGCGCC TGCTCGGCAT CACCCCGGCG ATGAAGGAAG GTTCCGACCT GGTGGCCTTC 
AGCGAACGCT ACCCGGAACG CTACTTCGAC GTCGCCATCG CCGAACAGCA TGCCGTGACC 
CTGGCCGCCG GCATGGCCTG CGAGGGCATG AAGCCGGTGG TGGCGATCTA CTCGACCTTC 
CTCCAGCGCG CCTACGACCA GTTGATCCAT GACGTCGCCG TGCAGCACCT CGACGTGCTG 
TTCGCCATCG ACCGCGCCGG CCTGGTCGGC GAGGACGGCC CGACCCACGC CGGTAGCTTC 
GACATCTCCT ACCTGCGCTG CATCCCCGGC ATGCTGGTGA TGACCCCCAG CGACGAGGAC 
GAGCTGCGCA AGCTGCTCAC CACCGGCTAC CTGTTCGATG GCCCGGCCGC GGTGCGCTAT 
CCGCGCGGCA GCGGCCCCAA CCATCCGATC GATCCGGACC TGCAACCGGT GGAGATCGGC 
AAGGGCGTGG TCCGTCGGCG CGGCGGCAGG GTCGCACTGC TGGTCTTCGG CGTGCAGTTG 
GCGGAGGCGA TGAAGGTTGC CGAAAGCCTC GACGCCACAG TCGTCGACAT GCGTTTCGTC 
AAACCCCTCG ACGAAGCCCT GGTACGCGAA TTGGCGGGCA GCCACGAACT GCTGGTGACC 
ATCGAGGAAA ACGCCGTGAT GGGCGGCGCC GGCTCGGCGG TCGGCGAGTT CCTCGCCAGC 
GAGGGCCTCG AAGTCCCGCT GCTGCAACTG GGCCTGCCCG ACTACTACGT CGAACACGCC 
AAGCCCAGCG AGATGCTCGC CGAATGCGGC CTGGATGCCG CGGGCATCGA AAAGGCGGTA 
CGCCAGCGTC TCGACCGGCA GTAG 

 

Protein sequence

MPKTLHEIPR ERPATPLLDR ASSPAELRRL GEADLETLAD ELRQYLLYTV GQTGGHFGAG 
LGVVELTIAL HYVFDTPDDR LVWDVGHQAY PHKILTERRE LMGTLRQKNG LAAFPRRAES 
EYDTFGVGHS STSISAALGM AIAARLQGKE RKSVAVIGDG ALTAGMAFEA LNHASEVDAD 
MLVILNDNDM SISHNVGGLS NYLAKILSSR TYSSMREGSK KVLSRLPGAW EIARRTEEYA 
KGMLVPGTLF EELGWNYIGP IDGHDLPTLV ATLRNMRDMK GPQFLHVVTK KGKGFAPAEL 
DPIGYHAITK LEAPGSAPKK TGGPKYSSVF GQWLCDMAAQ DARLLGITPA MKEGSDLVAF 
SERYPERYFD VAIAEQHAVT LAAGMACEGM KPVVAIYSTF LQRAYDQLIH DVAVQHLDVL 
FAIDRAGLVG EDGPTHAGSF DISYLRCIPG MLVMTPSDED ELRKLLTTGY LFDGPAAVRY 
PRGSGPNHPI DPDLQPVEIG KGVVRRRGGR VALLVFGVQL AEAMKVAESL DATVVDMRFV 
KPLDEALVRE LAGSHELLVT IEENAVMGGA GSAVGEFLAS EGLEVPLLQL GLPDYYVEHA 
KPSEMLAECG LDAAGIEKAV RQRLDRQ