| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_11400 |
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| Symbol | ribD |
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| ID | 4382046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 988435 |
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| End bp | 989556 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639323474 |
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| Product | riboflavin-specific deaminase/reductase |
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| Protein accession | YP_789063 |
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| Protein GI | 116052093 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCG CCGACCCGCT GTACATGGCC CGCGCCCTGG AACTGGCGCG CCAGGGGCTG
TACTCCACCC ATCCGAATCC GCGCGTCGGC TGCGTGCTGG TCAAGGACGG CCAGGTGGTC
GGCGAGGGCT GGCACGTCCG CGCCGGCGAG CCGCACGCCG AGGTCCATGC CCTGCGCCAG
GCCGGCGAGA ATGCACGCGG CGCCACCGCC TACGTGACCC TCGAGCCCTG CAGCCACTTC
GGCCGCACCC CGCCGTGCGC CGACGCGCTG GTGGGCGCCG GGGTGGCGCG GGTGGTCGCG
GCGATGCAGG ATCCCAACCC CGAGGTCGCC GGTCGCGGCC TGCTGCGTCT GATGCAGGCC
GGCATCGCGG TGCAGAGCGG GGTCCTCGAA GCCGAGGCGC GGGAACTCAA CATCGGTTTC
ATCAAGCGCA TGGAACATGG CCTGCCGTTC GTCCGGGTCA AGCTGGCGAT GAGCCTGGAC
GGGCGCACCG CCATGGCCAG CGGGGAAAGC CAGTGGATCA CCGGGCCCTC TGCGCGTTCG
GCGGTGCAGC GCTTGCGCGC TCGCTCCAGC GTGGTGTTGT CCGGCGCCGA TACGCTGCTG
GCGGACGATG CGCGGCTCAA CGTACGCCCC GACGAACTGG GCCTGAACGC CGAGCTTACC
GCGCTCGCCG CGGCTCGCCA GCCGTTGCGG GTGCTGGTCG ACGGGCGCCT GCGGGTGCCG
CTGGAGTCGG CGTTCTACCA GGCCGGTCCG GCACTGGTGG CGACCTGCGC CGCCGCCTCG
GCGCGCGAAC GCTTCCAGGA CGCCGGTCAC GAACTGCTGG CGCTGCCCTC CGCCGAGGGG
CATGTCGACC TGCACAAGTT GCTCGTGGAA CTGGCGGCGC GCGGCGCCAA CGAAGTGCTG
GTGGAGGCCG GCCCCCGCCT GGCCGGCGCC TTCGCTCGAC TGGGGCTGGT GGATGAGTAC
CGGCTGTTCG TCGCGCCGAA GTTCCTCGGC TCCAGCGCCC GTCCTTTGCT CGACTGGCCG
CTGACGCGGA TGGCCGATGC GGCGCAGTTG CGGATCGACG ACATCCGCGC GGTGGGCGAC
GACTGGCTGG TCACCGCGCG GCCCCATCCG CGGGACGCTT GA
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| Protein sequence | MNAADPLYMA RALELARQGL YSTHPNPRVG CVLVKDGQVV GEGWHVRAGE PHAEVHALRQ
AGENARGATA YVTLEPCSHF GRTPPCADAL VGAGVARVVA AMQDPNPEVA GRGLLRLMQA
GIAVQSGVLE AEARELNIGF IKRMEHGLPF VRVKLAMSLD GRTAMASGES QWITGPSARS
AVQRLRARSS VVLSGADTLL ADDARLNVRP DELGLNAELT ALAAARQPLR VLVDGRLRVP
LESAFYQAGP ALVATCAAAS ARERFQDAGH ELLALPSAEG HVDLHKLLVE LAARGANEVL
VEAGPRLAGA FARLGLVDEY RLFVAPKFLG SSARPLLDWP LTRMADAAQL RIDDIRAVGD
DWLVTARPHP RDA
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