| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_10470 |
|---|
| Symbol | |
|---|
| ID | 4382143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 901559 |
|---|
| End bp | 902767 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639323397 |
|---|
| Product | putative MFS transporter |
|---|
| Protein accession | YP_788986 |
|---|
| Protein GI | 116052170 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGCGA GTGCATCGAG GATTCAGGTC GGAAGCGGCG AACGACGCCT GTTGCTGCTG
TTGTCGGCGC TGGTGGCGTT CGGCCCGCTG TCGATCGACA TGTATTTGCC GAGCCTGCCG
GCGATCGCCG CCGATCTCGG CGCCAGCGAT GCCCAGGTGC AGCGGAGCAT CAGCGGCTTC
CTGGTCGGCT TCTGCGTCGG CATGCTGTTC TACGGCCCCT TGTCCGACCG TTTCGGCCGG
CGCCCGGTGC TGCTGGCCGG TATCGCCTTG TACCTGTTCA GCAGCCTGGC CTGCGCGCTG
GCCGACAGCG CGGGGCAACT GGTCCTGCTG AGGGTGCTCC AGGCCCTCGG CGGCGGCGCC
GCGTCGGTGC TGGCGCGGGC CATGGTGCGC GACCTCTATC CGTTGGGCGA GGCCGCCCGG
ATGCTGGCAT TGATGCACAT GGTGACCATG CTGGCACCGC TGGCCGCGCC GCTGCTCGGC
GGCTACCTGA TGCTCTGGGC CGGCTGGCGC GCGTTGTTCG TGGTCCTGGC GCTGTTCGCC
GGGCTCTGCC TGCTGGCGGT CTGGCGGGTC GCCGAAAGCC ACCCGCCGGA GCGCCGCGGC
GGCAGCCTGG CCCAGGCCTT TCTCGCCTAT GGGCGGCTGC TCGGCGACCG TCGCGCGCTG
GGCTACGTGC TGTGCATGGG GCTGGCGTTC GCCGGGATGT TCGCCTACAT CAGCGCCGCG
CCCTTCGTGT TCATCGAGCA TTTCGGCGTG CGCGCGGAGC GCTTCGGCTG GTTCTTCGGC
CTGAACATCC TCGGCGTGAT GCTCGCCACC TGGTGCAGCG CGCGCCTGGT GCGCCGCCAC
GGTCCGCGGC CGCTGCTGCG GGCCGGCAGC CTGCTGGCCT GCCTGTCCGG GCTGTTCCTC
CTCGGCTATG CGGCGCTCGG CGAGCGGGGC GGGTTGTGGG CGCTGGTGCC GGGGCTGCTG
TGCTTCGTCA GCGTCACCGG CCTGCTCGGC GCCAACTGCA TCGCCAGCCT GCTGGCGTTG
TATCCCGGAC AGGCCGGGGC GGCTTCGGCG GTGGCGGTGT CCGGGCAGTT CGGCCTCGGC
TGCCTGGCCA GCCTGGCGGT CGGCTGGCTG GCGCTGCCCG GCGTGCTGCC GATGGCGCTG
GTGATGGCCG TCTGCGGCGT CGGCAGCCTG CTCGCACTGG GCTTGGCCCT GCACGGCGGA
AACCGTTGA
|
|---|
| Protein sequence | MPASASRIQV GSGERRLLLL LSALVAFGPL SIDMYLPSLP AIAADLGASD AQVQRSISGF
LVGFCVGMLF YGPLSDRFGR RPVLLAGIAL YLFSSLACAL ADSAGQLVLL RVLQALGGGA
ASVLARAMVR DLYPLGEAAR MLALMHMVTM LAPLAAPLLG GYLMLWAGWR ALFVVLALFA
GLCLLAVWRV AESHPPERRG GSLAQAFLAY GRLLGDRRAL GYVLCMGLAF AGMFAYISAA
PFVFIEHFGV RAERFGWFFG LNILGVMLAT WCSARLVRRH GPRPLLRAGS LLACLSGLFL
LGYAALGERG GLWALVPGLL CFVSVTGLLG ANCIASLLAL YPGQAGAASA VAVSGQFGLG
CLASLAVGWL ALPGVLPMAL VMAVCGVGSL LALGLALHGG NR
|
|---|
| |