| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_08780 |
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| Symbol | rpoC |
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| ID | 4381344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 750342 |
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| End bp | 754541 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639323261 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_788850 |
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| Protein GI | 116052304 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0182127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAGACT TGCTTAATCT GTTGAAAAAC CAGGGTCAAA TCGAAGAGTT CGATGCCATC
CGTATTGGCC TGGCTTCGCC CGAGATGATT CGTTCCTGGT CTTTCGGCGA AGTTAAAAAG
CCGGAAACCA TCAACTACCG TACCTTCAAG CCGGAGCGCG ACGGCCTGTT CTGCGCCAAG
ATCTTCGGCC CGGTGAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTCAAGCAC
CGCGGTGTGA TCTGCGAGAA GTGCGGCGTG GAAGTCGCCC TGGCCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCGAGCT GGCTTCGCCG GTTGCCCACA TCTGGTTCCT GAAGTCGCTG
CCGTCCCGTA TCGGCCTGCT GCTGGACATG ACCCTGCGCG ATATCGAGCG CGTGCTCTAT
TTCGAGAGCT ACGTGGTGAT CGATCCGGGC ATGACCACTC TGGAAAAGGG CCAACTGCTG
AACGACGAGC AATACTTCGA GGCCCTCGAA GAGTTCGGTG ACGATTTCGA TGCTCGCATG
GGCGCCGAAG CCGTTCACGA ACTGCTCAAC GCCATCGACC TGGAGCACGA GATCGGCCGC
CTGCGCGAAG AGATTCCGCA GACCAACTCG GAAACCAAGA TCAAGAAGCT GTCCAAGCGC
CTGAAGCTGA TGGAAGCCTT CCAGGGCTCC GGCAACAAGC CTGAGTGGAT GGTCCTGACC
GTCCTGCCGG TGCTGCCGCC GGACCTGCGT CCGCTGGTTC CGCTGGATGG CGGTCGCTTC
GCGACTTCCG ACCTGAACGA CCTATATCGT CGGGTGATCA ACCGTAACAA CCGTCTGAAG
CGCCTGCTCG ACCTGGCCGC TCCGGACATC ATCGTGCGCA ACGAAAAGCG CATGCTGCAG
GAAGCCGTCG ACGCCCTGCT CGACAACGGC CGTCGCGGTC GCGCCATCAC CGGCTCGAAC
AAGCGTCCGC TGAAGTCGCT GGCCGACATG ATCAAGGGCA AGCAAGGTCG CTTCCGTCAG
AACCTGCTCG GCAAGCGCGT GGACTACTCC GGTCGTTCCG TGATCACCGT GGGCCCGACC
CTGCGCCTGC ACCAGTGCGG TCTGCCGAAG AAGATGGCCC TGGAGCTGTT CAAGCCGTTC
ATCTTCGGCA AGCTGGAAGG TCGTGGCATG GCCACCACCA TCAAGGCCGC CAAGAAAATG
GTCGAGCGCG AGCTGCCCGA GGTCTGGGAC GTTCTCGCCG AAGTTATCCG CGAGCATCCG
GTTCTCCTGA ACCGTGCGCC GACCCTGCAC CGTCTGGGCA TCCAGGCGTT CGAGCCGGTC
CTCATCGAAG GCAAGGCGAT CCAGCTGCAC CCGCTGGTCT GCGCCGCGTA CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTCCACGTT CCGCTGACCC TCGAGGCCCA GCTGGAAGCG
CGCGCGCTGA TGATGTCCAC CAACAACATC CTGTCGCCCG CCAACGGCGA GCCGATCATC
GTTCCGTCGC AGGACGTGGT AATGGGTCTG TACTACATGA CCCGTGAAGC GATCAACGCG
AAGGGCGAGG GCATGGCCTT CGCCGACCTG CAGGAAGTCG ACCGCGCCTA CCGCAGCGGC
CAGGCGTCCC TGCACGCTCG TGTGAAAGTG CGCATCAACG AAAAGATCAA GGGTGAAGAC
GGCCAACTGA CCGCCAATAC CCGTATCGTC GACACCACCG TCGGCCGCGC GCTGCTGTTC
CAGGTCGTTC CGGCCGGCCT GCCGTTCGAC GTGGTCAACC AGTCGATGAA GAAGAAGGCG
ATCTCCAAGC TGATCAACCA CTGCTATCGC GTGGTGGGTC TGAAGGACAC CGTCATCTTC
GCCGACCAGC TGATGTACAC CGGTTTCGCC TACTCGACCA TTTCCGGCGT GTCCATCGGC
GTCAACGACT TCGTCATCCC GGACGAAAAG GCGCGGATCA TCAACGCCGC CACCGACGAA
GTGAAGGAGA TCGAGAGCCA GTACGCCTCC GGCCTGGTAA CCCAGGGCGA GAAGTACAAC
AAGGTGATCG ACCTGTGGTC GAAGGCCAAC GACGAAGTGT CCAAGGCGAT GATGGCCAAC
CTCTCGAAAG AGAAGGTCGT CGATCGCGAG GGCAAGGAAG TCGATCAGGA GTCCTTCAAC
TCCATGTACA TGATGGCTGA CTCGGGTGCG CGGGGCTCCG CGGCCCAGAT CCGTCAGCTG
GCAGGTATGC GTGGTCTGAT GGCCAAGCCG GACGGCTCGA TCATCGAGAC CCCGATCACC
GCGAACTTCC GGGAAGGCCT GAACGTACTC CAGTACTTCA TCTCCACCCA CGGTGCTCGT
AAGGGTCTGG CGGATACCGC GCTGAAGACC GCGAACTCCG GTTACCTGAC CCGTCGTCTG
GTCGACGTGG CCCAGGATCT GGTAGTGACC GAGATCGATT GCGGTACCGA GCACGGCCTG
CTGATGTCGC CGCACATCGA AGGCGGCGAC GTGGTCGAAC CGCTCGGCGA GCGCGTGCTC
GGCCGTGTGA TCGCGCGCGA CGTGTTCAAG CCGGGCAGCG ACGAGGTCAT CGTGCCGGCC
GGCACCCTGA TCGACGAGAA GTGGGTCGAC TTCCTCGAAG TGATGAGCGT CGACGAAGTG
GTGGTGCGTT CCCCGATCAC CTGCGAAACC CGTCATGGCA TCTGCGCCAT GTGCTACGGC
CGCGACCTGG CCCGTGGCCA TCGCGTCAAC ATCGGCGAGG CGGTCGGTGT CATCGCTGCC
CAGTCCATCG GTGAGCCGGG CACCCAGCTG ACCATGCGTA CCTTCCACAT CGGCGGTGCG
GCCAGCCGGA CCTCCGCGGC CGACAACGTC CAGGTGAAGA ACGGCGGTAC CATCCGCCTG
CACAACCTGA AGCATGTGGT TCGTGCCGAC GGCGCGCTGG TCGCGGTTTC CCGTTCCGGC
GAACTGGCGG TTGCCGACGA CTTCGGTCGC GAGCGCGAGC GCTACAAGCT GCCGTACGGT
GCGGTGATCT CGGTCAAGGA AGGTGACAAG GTCGACCCGG GCGCCATCGT CGCCAAGTGG
GACCCGCACA CCCACCCGAT CGTCACCGAG GTGGACGGTA CCGTGGCCTT CGTGGGCATG
GAAGAGGGCA TCACCGTCAA GCGTCAGACC GACGAACTGA CCGGCCTGAC CAACATCGAA
GTGATGGATC CGAAGGACCG TCCGGCTGCC GGCAAGGACA TCCGTCCGGC CGTGAAGCTG
ATCGATGCCG CGGGCAAGGA CCTGCTGCTG CCGGGTACCG ACGTACCGGC GCAGTACTTC
CTGCCGGCCA ACGCCCTGGT CAACCTGACC GACGGCGCCA AGGTGAGCAT CGGTGACGTT
GTCGCGCGTA TCCCGCAGGA AACCTCGAAG ACCCGTGACA TCACCGGTGG TCTGCCGCGC
GTTGCCGACC TGTTCGAGGC TCGTCGTCCG AAAGAGCCTT CGATCCTGGC GGAAATCAGC
GGCACCATCT CCTTCGGCAA GGAGACCAAG GGCAAGCGCC GCCTGGTCAT CACGCCGAAC
GATGGCAGCG ATCCGTACGA GGAGCTGATT CCGAAGTGGC GTCACCTGAA CGTGTTCGAA
GGCGAACAGG TGAACCGCGG CGAAGTCATC TCCGACGGTC CGAGCAACCC GCACGACATC
CTGCGCCTGC TGGGCGTGAG CTCGCTGGCG AAGTACATCG TCAACGAGAT CCAGGACGTC
TACCGTCTGC AGGGCGTGAA AATCAACGAC AAGCACATCG AGACCATCCT GCGTCAGATG
CTGCGCAAGG TCGAAGTCAG TGAGTCCGGC GACTCCAGCT TCATCAAAGG CGACCAGGTG
GAACTCACCC AGGTGCTGGA AGAGAACGAA CAGCTCGGTA CCGAGGACAA GTTCCCGGCC
AAGTACGAGC GGGTTCTGCT GGGTATCACC AAGGCCTCCC TGTCGACCGA GTCGTTCATT
TCCGCGGCGT CGTTCCAGGA GACCACCCGC GTCCTCACCG AGGCGGCGGT CACCGGCAAG
CGCGACTTCC TGCGTGGTCT GAAAGAGAAC GTGGTCGTGG GTCGCCTGAT CCCGGCCGGT
ACCGGTCTGG CTTACCACAG CGAGCGCAAG CGTCAGCGCG ACCTCGGCAA GCCGCAGCGT
GTGAGTGCCA GCGAGGCGGA AGCCGCACTG ACCGAAGCGC TGAACTCGAG CGGTAACTAA
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| Protein sequence | MKDLLNLLKN QGQIEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLLLDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVHELLN AIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNKPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLEGRGM ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVMGL YYMTREAINA KGEGMAFADL QEVDRAYRSG
QASLHARVKV RINEKIKGED GQLTANTRIV DTTVGRALLF QVVPAGLPFD VVNQSMKKKA
ISKLINHCYR VVGLKDTVIF ADQLMYTGFA YSTISGVSIG VNDFVIPDEK ARIINAATDE
VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMAN LSKEKVVDRE GKEVDQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EIDCGTEHGL LMSPHIEGGD VVEPLGERVL
GRVIARDVFK PGSDEVIVPA GTLIDEKWVD FLEVMSVDEV VVRSPITCET RHGICAMCYG
RDLARGHRVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADNV QVKNGGTIRL
HNLKHVVRAD GALVAVSRSG ELAVADDFGR ERERYKLPYG AVISVKEGDK VDPGAIVAKW
DPHTHPIVTE VDGTVAFVGM EEGITVKRQT DELTGLTNIE VMDPKDRPAA GKDIRPAVKL
IDAAGKDLLL PGTDVPAQYF LPANALVNLT DGAKVSIGDV VARIPQETSK TRDITGGLPR
VADLFEARRP KEPSILAEIS GTISFGKETK GKRRLVITPN DGSDPYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSNPHDI LRLLGVSSLA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEVSESG DSSFIKGDQV ELTQVLEENE QLGTEDKFPA KYERVLLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDFLRGLKEN VVVGRLIPAG TGLAYHSERK RQRDLGKPQR
VSASEAEAAL TEALNSSGN
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