| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_08760 |
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| Symbol | rpoB |
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| ID | 4381345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 746203 |
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| End bp | 750276 |
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| Gene Length | 4074 bp |
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| Protein Length | 1357 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639323260 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_788849 |
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| Protein GI | 116052305 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.00338261 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC
GTCATGGATG TGCCGTATTT GCTGGCCATC CAGCTGGATT CCTATCGCGA ATTCCTGCAG
GCTGGCGCAA CCAAGGAGCA GTTCCGCGAT ATCGGTCTGC ACGCGGCCTT CAAGTCCGTT
TTCCCGATTA TCAGCTATTC CGGCAATGCT GCCCTGGAAT ACGTCGGCTA CCGTCTGGGT
GAGCCGGCAT TCGATGTCAA GGAGTGCGTG CTGCGCGGCG TGACCTTCGC CGTACCGCTG
CGCGTGAAAG TTCGCCTGAT CATCTTCGAC CGCGAGTCGT CGAACAAGGC GATCAAGGAC
ATCAAGGAAC AAGAAGTCTA CATGGGGGAA ATCCCCCTGA TGACCGAGAA CGGTACCTTC
ATCATCAACG GTACCGAGCG TGTCATCGTC TCCCAGCTGC ACCGTTCCCC GGGCGTGTTC
TTCGACCACG ACCGTGGCAA GACCCACAGC TCCGGCAAGC TGCTGTACTC CGCGCGGATC
ATTCCTTACC GCGGTTCCTG GCTGGACTTC GAGTTCGATC CGAAGGACTG CGTGTTCGTC
CGTATCGACC GTCGCCGCAA GCTGCCGGCC TCGGTACTGC TGCGCGCGCT CGGCTACAGC
ACCGAAGAGA TCCTCAACGC CTTCTACGCG ACCAACGTCT TCCACATCAA GGGCGAGACC
CTGAACCTGG AACTGGTCCC GCAGCGTCTG CGCGGTGAAG TCGCGAGCAT CGACATCAAG
GATGGCAGCG GCAAGGTGAT CGTGGAGCAG GGGCGTCGTA TCACTGCCCG CCACATCAAC
CAGCTGGAAA AGGCTGGCGT GAGCCAGCTG GAAGTGCCGT TCGACTACCT GATCGGCCGT
ACCATCGCCA AGGCGATCGT GCATCCGGCT ACCGGCGAGA TCATCGCCGA GTGCAACACC
GAGCTGACCC TCGACCTCCT GGCCAAGGTG GCCAAGGCCC AGGTCGTGCG CATCGAGACT
CTGTACACCA ACGACATCGA CTGCGGTCCG TTCATCTCCG ACACCCTGAA GATCGACAAC
ACCAGCAACC AGCTGGAAGC CCTGGTCGAA ATCTACCGGA TGATGCGTCC GGGCGAGCCG
CCGACCAAGG AAGCTGCCGA GACCCTGTTC GGCAACCTGT TCTTCAGCGC CGAGCGTTAC
GACCTGTCGG CCGTGGGCCG GATGAAGTTC AACCGCCGTA TCGGTCGTAC CGAGATCGAA
GGTCCGGGCG TCCTGAGCAA GGAAGACATC ATCGATGTGC TCAAGACCCT CGTCGACATC
CGTAACGGCA AGGGCATCGT CGATGACATC GACCACCTGG GCAACCGTCG CGTCCGTTGC
GTCGGCGAAA TGGCCGAGAA CCAGTTCCGC GTGGGCCTGG TGCGCGTCGA GCGCGCGGTC
AAGGAACGCC TGTCCATGGC CGAAAGCGAA GGCCTGATGC CGCAGGACCT GATCAACGCC
AAGCCGGTGG CTGCCGCGAT CAAGGAGTTC TTCGGTTCGA GCCAGCTGTC GCAGTTCATG
GGCCAGAACA ACCCGCTTTC CGAGATCACC CACAAGCGCC GCGTCTCCGC GCTCGGCCCG
GGCGGTCTGA CCCGTGAGCG TGCGGGCTTC GAGGTTCGTG ACGTACACCC GACCCACTAC
GGCCGCGTGT GCCCGATCGA AACCCCTGAA GGTCCGAACA TCGGTCTGAT CAACTCCCTG
GCGACCTACG CCCGCACCAA CAAGTACGGC TTCCTCGAGA GCCCGTACCG CGTAGTCAAG
GACAGCCTGG TAACCGACGA GATCGTGTTC CTGTCGGCGA TCGAAGAAGC CGACCACGTC
ATTGCCCAGG CTTCGGCGAC CCTCAACGAG AAGGGTCAAC TGGTGGACGA ACTGGTGGCC
GTGCGTCACC TGAACGAATT CACCGTGAAG GCGCCGGAAG ACGTGACCCT GATGGACGTG
TCGCCGAAGC AGGTCGTTTC CGTAGCTGCC TCGCTGATTC CGTTCCTCGA GCACGATGAC
GCCAACCGCG CACTCATGGG CTCGAACATG CAGCGTCAGG CCGTGCCGAC CCTGCGTGCC
GACAAGCCGC TGGTGGGTAC CGGCATGGAG CGCAACGTGG CGCGCGACTC CGGCGTCTGC
GTCGTGGCTC GCCGTGGTGG TGTGATCGAC TCGGTCGATG CCAGCCGTGT CGTGGTTCGC
GTGGCGGATG ACGAGGTCGA GACCGGCGAA GCGGGTGTCG ACATCTACAA CCTGACCAAG
TACACCCGTT CCAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTGAG CAAGGGTGAC
GTGGTTGCGC GCGGCGACAT CCTGGCCGAC GGTCCGTCCA CCGACATGGG CGAACTGGCC
CTGGGCCAGA ACATGCGCGT AGCGTTCATG CCCTGGAACG GCTTCAACTT CGAAGACTCC
ATCTGCCTGT CCGAGCGCGT GGTCCAGGAA GATCGTTTCA CCACGATCCA CATCCAGGAA
CTGACCTGCG TCGCTCGTGA CACCAAGCTC GGCCCAGAGG AAATCACCGC GGACATCCCG
AACGTGGGCG AGGCCGCGCT GAACAAGCTG GACGAAGCCG GTATCGTCTA CGTCGGCGCC
GAAGTGCAGG CCGGCGACAT CCTGGTCGGC AAGGTCACTC CGAAAGGCGA GACCCAGCTG
ACTCCGGAAG AGAAGCTGCT GCGCGCGATC TTCGGTGAGA AGGCGTCCGA CGTGAAGGAC
ACCTCCCTGC GTGTGCCGAC CGGCACCAAG GGTACCGTCA TCGACGTTCA GGTCTTCACC
CGCGACGGCG TCGAGCGCGA CTCCCGCGCT CTGTCCATCG AGAAGATGCA ACTCGACCAG
ATCCGCAAGG ACCTGAACGA AGAGTTCCGC ATCGTCGAAG GCGCGACCTT CGAGCGTCTG
CGTGCCGCCC TGGTCGGTGC CAAGGCTGAA GGTGGCCCGG CGCTGAAGAA GGGTACGGAG
ATCACCGACG ACTACCTCGA CGGCCTCGAG CGCGGCCAGT GGTTCAAGCT GCGCATGGCC
GACGACGCCC TGAACGAACA GCTGGAGAAG GCCCAGGCCT ACATCAGCGA TCGTCGCCAG
CTCCTGGACG ACAAGTTCGA GGACAAGAAG CGCAAGCTGC AGCAGGGCGA CGACTTGGCT
CCGGGCGTGC TGAAGATCGT CAAGGTCTAC CTGGCGATCA AGCGTCGCAT CCAGCCGGGC
GACAAGATGG CCGGCCGTCA CGGTAACAAG GGTGTGGTCT CGGTGATCAT GCCGGTGGAA
GACATGCCGC ACGATGCCAA CGGCACCCCG GTCGACATCG TCCTCAACCC GTTGGGCGTA
CCGTCGCGTA TGAACGTCGG CCAGATCCTC GAAACCCACC TGGGCCTCGC GGCCAAGGGG
CTGGGCGAGA AGATCAACCG CATGCTCGAA GAGCAGCGCA AGGTCGCCGA ACTGCGTAAG
TTCCTGCACG AGATCTACAA CGAGATCGGC GGTCGCGAGG AAAACCTCGA CGAGCTGGGC
GACAACGAGA TCCTCGCGCT GGCCAAGAAC CTGCGCGGTG GCGTACCGAT GGCGACCCCG
GTGTTCGATG GCGCCAAGGA ACGCGAGATC AAGGCCATGC TGAAGCTGGC CGACCTGCCG
GAAAGCGGCC AGATGCGTCT GTTCGACGGC CGTACCGGCA ACCAGTTCGA GCGTCCGACC
ACCGTCGGCT ACATGTACAT GCTCAAGCTG AACCACCTGG TGGACGACAA GATGCACGCC
CGTTCCACCG GCTCGTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCACAGTTC
GGTGGTCAGC GCTTCGGTGA GATGGAGGTG TGGGCGCTGG AAGCCTATGG CGCGGCGTAC
ACCCTGCAGG AAATGCTGAC GGTCAAGTCG GACGACGTGA ACGGCCGGAC CAAGATGTAC
AAGAACATCG TGGACGGCGA TCACCGCATG GAGGCCGGCA TGCCCGAGTC CTTCAACGTT
CTGATCAAAG AGATCCGTTC GCTCGGCATC GACATCGAAC TGGAAACCGA ATAA
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| Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGATKEQFRD IGLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD RESSNKAIKD
IKEQEVYMGE IPLMTENGTF IINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYS TEEILNAFYA TNVFHIKGET
LNLELVPQRL RGEVASIDIK DGSGKVIVEQ GRRITARHIN QLEKAGVSQL EVPFDYLIGR
TIAKAIVHPA TGEIIAECNT ELTLDLLAKV AKAQVVRIET LYTNDIDCGP FISDTLKIDN
TSNQLEALVE IYRMMRPGEP PTKEAAETLF GNLFFSAERY DLSAVGRMKF NRRIGRTEIE
GPGVLSKEDI IDVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAIKEF FGSSQLSQFM GQNNPLSEIT HKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL ATYARTNKYG FLESPYRVVK
DSLVTDEIVF LSAIEEADHV IAQASATLNE KGQLVDELVA VRHLNEFTVK APEDVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVARRGGVID SVDASRVVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD
VVARGDILAD GPSTDMGELA LGQNMRVAFM PWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVQAGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDSRA LSIEKMQLDQ
IRKDLNEEFR IVEGATFERL RAALVGAKAE GGPALKKGTE ITDDYLDGLE RGQWFKLRMA
DDALNEQLEK AQAYISDRRQ LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIKRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDIVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKINRMLE EQRKVAELRK FLHEIYNEIG GREENLDELG DNEILALAKN LRGGVPMATP
VFDGAKEREI KAMLKLADLP ESGQMRLFDG RTGNQFERPT TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EAGMPESFNV LIKEIRSLGI DIELETE
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