| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_07930 |
|---|
| Symbol | |
|---|
| ID | 4385484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 682911 |
|---|
| End bp | 683729 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639323183 |
|---|
| Product | phosphoglycolate phosphatase |
|---|
| Protein accession | YP_788781 |
|---|
| Protein GI | 116054336 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.00282972 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCTG CGGAGCCGTT CTTCGCCACG CGCCTGCCGC GTCTGGTGAT GTTCGACCTG
GATGGCACGT TGGTCGATTC CGTTCCCGAC CTCACCGCCG CGGTCGACAG CATGCTCGCC
AGCCTCGGGC GGCCACCGGC GGGCATCGAG AAGGTCCGCC AGTGGATCGG TAACGGCGCG
CGTGTGCTGG TGCGTCGCGC CCTGGCGGGA AGCATCGAGC ATGACGGCAT TGGTGAGGAA
GAAACCGAAG CCGCGCTGGC GCTGTTCATG GAGGCCTATG CCGACAGTCA TGCGCTCACC
GAGGTCTACC CCGGCGTCGT CGACACCCTC AAGTGGCTCA AGCGCAACGG CGTGGAAATG
GCGCTGATCA CCAACAAGCC GGAGCGCTTC GTCGCTCCGC TGCTGGATGA GATGAAGCTG
GGTCGCTATT TCCGCTGGAT CATCGGCGGC GACACCCTGC CGCAGCAGAA GCCCGACCCG
GCGGCGCTGC TGTTCGTGAT GAAGATGGCC GGCATCGAGC CCGAAGATGC GTTGTTCGTC
GGTGACTCGC GCAACGACGT GCTCGCCGCC AAGGCTGCCG GTGTGCGCTG CGCGGCGCTG
ACCTATGGCT ACAACCACGG CCGGCCGATC GCCGAGGAAG CGCCCACCCT GGTCATCGAC
AACCTGCGCG ACCTGCTGCC TTGCGCCGAC CAGGCCGCTG AGATAGTGTT GCCGGACGAC
TCCCTTTCCC CCTCCGACCA GCGAGATCAA GCCGTGGCGG TCAGCAAACT CTGGATGAAG
GTCATCAAGG CCCTGGCGCG TTGGCGCTGG CGCGCCTGA
|
|---|
| Protein sequence | MSAAEPFFAT RLPRLVMFDL DGTLVDSVPD LTAAVDSMLA SLGRPPAGIE KVRQWIGNGA
RVLVRRALAG SIEHDGIGEE ETEAALALFM EAYADSHALT EVYPGVVDTL KWLKRNGVEM
ALITNKPERF VAPLLDEMKL GRYFRWIIGG DTLPQQKPDP AALLFVMKMA GIEPEDALFV
GDSRNDVLAA KAAGVRCAAL TYGYNHGRPI AEEAPTLVID NLRDLLPCAD QAAEIVLPDD
SLSPSDQRDQ AVAVSKLWMK VIKALARWRW RA
|
|---|
| |