Gene PA14_07480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_07480 
Symbol 
ID4384221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp640581 
End bp642266 
Gene Length1686 bp 
Protein Length561 aa 
Translation table11 
GC content58% 
IMG OID639323149 
Productputative reverse transcriptase 
Protein accessionYP_788747 
Protein GI116054302 
COG category[L] Replication, recombination and repair 
COG ID[COG3344] Retron-type reverse transcriptase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000108992 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value0.278112 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAAC TCAGCCCATC GGCCGGGTCT GCGCTTTCCG GCGCTCCGCA GCAGTGGCAC 
GACATCGACT GGTGTCGGGT CCAGCGGAAT GTCCGGGGAA TGCAGGTACG GATTGCGAAG
GCTTGTCGGG AAGGCAAATG GCGCAGGGTG AAGGCCCTAC AACGGATGCT GACCCGCTCG
ACGTCGGCCA GGTACCTGGC TGTACGGAGA GTCACTGAAA ACCAGGGCAA GCGCACGGCG
GGAGTCGACC GCGTGCTCTG GGATACGCCT GACACCAAGT GGAAAGCGGC ACAAGGGTTG
AAAAGGCGCG GGTACCAACC TCGGCCTCTA CGGCGAGTGT TCATCCCGAA GTCGAACGGA
AAGGAGCGCC CCCTGGGTAT CCCGACCATG ACTGACAGGG CAATGCAGGC ACTCTACCTG
CTCGCTCTGT CGCCCATTGC AGAAACCACC GGCGATCCGA ACAGCTATGG CTTCAGGATC
GAGCGATCCA CGGCGGATGC AATGTCCCAG TTGTTCGTTT GCCTATCCGG AAAGGCTTCG
GCCCAATGGA TACTGGAGGC GGACATACAA GGGTGTTTTG ACCACATCAA TCATGACTGG
CTACTGAACC ATGTCCCCAC GGACAAGGTG ATCCTCCGGA AATGGTTGAA GGCCGGCGTG
ATCCACAAAG GCCAGCTCCA GGCAACGGAT GCTGGAACAC CTCAAGGCGG AATCATCTCG
CCTACTTTGG CAAACATGGT GCTCGATGGC CTGGAATCAC AGCTCAAGCG ACACCTGGGC
GTGACAAGGG CGAAGAAGCT GAAACTCAAT GTGGTGCGCT ATGCGGACGA CTTCGTCATC
ACCGGTGTCT CTCCCGAGGT ACTGGAGAAA GAAGTCAAAC CCTGGGTAGA GCAGTTCCTG
GCGGTACGCG GGCTGCAGCT CTCTCTGGAG AAAACGCGGA TCGCCCACAT AGATCAGGGC
TTCGACTTCC TCGGTTGGAA CTTCCGCAAG TACAACGGGA AGCTTCTGAT CAAACCCAGC
CAGAAGAACG CGAAAGCGTT CTACGGCAAG GTGAAGGAGG TCATCGAAAC CAGCAGGACG
GCAAGGCAAG AGGACTTGAT CCGAACGCTG AATCCGATTC TGCGCGGCTG GGCGCTGTAT
CACCAGCCAG TGGTTGCCAA GCAAACGTTC AGCCGCATGG ACAACAGAGT GTTTCTCAAG
CTCTGGCGTT GGGCGAAACG GCGGCACCCG AACAAGTCAC TGGATTGGAT CAGGAGGCGA
TATTTCCGGA TTCACGGGGA CAAGACTTGG GTGTTCGCTA CCACGGTGCT GGAAAGCAAC
GGTAAGAAAC GGGAGGTCGC GCTGTACTCG CTGGCGAGCA CGCCGATTGA GCGACATAGG
AAGGTGAGTG GGGAATACAA CCCCTACGAT CCAGCCATGG AAGCAATAGG TGAAAAACTG
CGAACGGAAC GGATGTTGAA AAAGCTGAAG TACCGAACTC AGATCAGAAA CCTATACCTC
TCCCAGAAGG GGCTCTGCTC GCTCTGCAAC CAACCGATAA CCAGGGAAAC CGGGTGGCAC
GACCACCACA TCCTCTATCG CTCACAAGGC GGTGGAGACT CCCTGGAGAA CCGGGTACTA
TTGCACCCCG CTTGCCACCA GCAACTCCAT GCTCGTGGTC TGACAGTAAG CAAGCCGGCC
CGTTAG
 
Protein sequence
MKELSPSAGS ALSGAPQQWH DIDWCRVQRN VRGMQVRIAK ACREGKWRRV KALQRMLTRS 
TSARYLAVRR VTENQGKRTA GVDRVLWDTP DTKWKAAQGL KRRGYQPRPL RRVFIPKSNG
KERPLGIPTM TDRAMQALYL LALSPIAETT GDPNSYGFRI ERSTADAMSQ LFVCLSGKAS
AQWILEADIQ GCFDHINHDW LLNHVPTDKV ILRKWLKAGV IHKGQLQATD AGTPQGGIIS
PTLANMVLDG LESQLKRHLG VTRAKKLKLN VVRYADDFVI TGVSPEVLEK EVKPWVEQFL
AVRGLQLSLE KTRIAHIDQG FDFLGWNFRK YNGKLLIKPS QKNAKAFYGK VKEVIETSRT
ARQEDLIRTL NPILRGWALY HQPVVAKQTF SRMDNRVFLK LWRWAKRRHP NKSLDWIRRR
YFRIHGDKTW VFATTVLESN GKKREVALYS LASTPIERHR KVSGEYNPYD PAMEAIGEKL
RTERMLKKLK YRTQIRNLYL SQKGLCSLCN QPITRETGWH DHHILYRSQG GGDSLENRVL
LHPACHQQLH ARGLTVSKPA R