Gene PA14_03720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_03720 
Symbol 
ID4383690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp332467 
End bp334749 
Gene Length2283 bp 
Protein Length760 aa 
Translation table11 
GC content67% 
IMG OID639322854 
Productsensory box GGDEF domain-containing protein 
Protein accessionYP_788454 
Protein GI116054012 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.000164821 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCCCCC GCCTGAGTGC CCTTCGCCTG AGCCTGGCTT ATCTCGCAAT CGCCATCGCC 
TGGGCGTTCC TGAGCGATCA TTTGTTACAA AACCAGGTCC AGGACCACGA CCAGCTGGTG
TTCTGGATGA CCGCCAAGCG GCTGTTCTTC TTCGCCGCAA CCGGCCTGCT CCTGTACCTC
TACCTGGTAC GCCAATTCCG CCGCAAGGCC CAGGCCTACG ACGAACTGCA CGGCAGCGAG
CAGCGCCTGA ACCGTGCCCT GGAAGCGGTG CGCGACGGTC TCTGGGATTG GGACCTGGTG
ACCGACCGGA TGTTCGTCTC GCCGGGCTAC GCCGCGCTGA TCGGCCTCGC TCCGGAGGAA
CTCGGCGACC CCATCGAGAC CTGGAAGAAG CGCCTGCACC CGGAAGAGTA CGCCACCGTG
CTGGAGGCCC ACCGCAACCA CCTGCAGGGC CTGACCGACA ATCTCGACCA CATCTACCGC
CTGCGCCACA AGGACGGCGA CTACCGCTGG ATCCACTCGC GCGGCCGGGT CCTCCGCGAT
GCCCTGGGCA AGCCGCTGCA CTACACCGGC GTGGCCCGCG ACATCACCCT GCAGCGGCTC
AAGGAAGACC ACCTGCGCCA GGCCGCGGCG GTATTCGACA GCACCCGCGA GGGCGTTCTG
GTCACCGATG CCCAGGCGGT GATCGTGCAC GTCAACCCTT CCTTCGAGCG CATCACCGGC
TACCGTTCCG AGGACGTGCT CGGCAAGACC CCGGCGATCC TCCGCTCCGG TCGCCAGGAC
CAGGCGTTCT ACCAGCGCCT GTGGCTGGCC CTGCGCGAGC AGGACGTCTG GAGCGGAGAG
ATCTGGAACC GTCGCAAGAG CGGCGAGATC TACCCGCAGT GGCTGCACAT CCGCGCGGTG
CGCAACGACC AGGGCCAACT GACCCACTAC GTCGGGGTGT TCTCCGACCT GAGCAGCATC
AAGCGCTCGG AGAACGAACT GGACTTCCTC GCCCACCACG ACTCGCTGAC CGGCCTGCCC
AACCGCGTGC TGCTGCGCGA GCGCATCGAG CAGGCGCTGG AGAACGGCAA GGACCGGACG
GTGGCCGGGG CCCTGCTGCT GATCGACCTC GACCACTTCA AGCACATCAA CGACAGCCTC
GGCCACACCA CCGGCGACAT GCTCCTCAAG GAAGTCAGCA AGCGCCTGCA ACACCAGCTC
GACGAGCGCT GCCTGCTGTC GCGACTGGGC GGCGACGAAT TCGCCATCCT CGTCGAGAAC
GACGACCCGG AAGCCGTCGC GCGACTCTCA CAGCGCATCC TCGACGGTTT CAACGCGCCG
TTCGACATCC ACTGCCAGCC GATCTATATC AGCGCCAGCC TCGGTGTCAG CCTCTACCCG
GAAGACGCCA GCGACGTCGA CCACCTGATG CAACACGCCG ACGCCGCGCT GTTCCAGGCC
AAGGACAGCG GGCGTAACGC CTACGCCTTC TACACCCGCG TGCTGACCGC CCGGGCCCGC
GCCCATGTCC AGGTGGAATC GGCCCTGCGC CATGCGCTGG AGCACGACGA ACTGCGCGTC
CACTACCAGC CGGTGCACGA CCTGGCCAGC GGGCGGATCG TCGGCGTCGA GTCGCTGGTG
CGCTGGCAGC ATCCCGAGCG CGGCCTGGTG CCGCCAGGCG AGTTCGTCCC GGTGGCGGAG
GAATGCGGGC TGATCGCCGC GCTGGACAAT TGGGTGCTCA AGCGTGCCTG CCGGCAGATG
CGCGAATGGC AACAGCGCGG CGTCGAACTG GAGTTCGTCG CGGTCAACGT CTCCAGTCGG
CTGTTCAACC GCGGCGGCCT AGAGGAAAGG ATCGCCAACG CCCTGGAAGA GTCCGGGCTG
GAGCCCCGCT ACCTGGAGCT GGAAGTCACC GAAAGCGCGG TGATGGAGGA CTTCGAGCAG
TCCCTCAACC TGCTCTGCCG CCTGCGCATC CTCGGCGTGA ACCTGGCCAT CGACGACTTC
GGCACCGGCT ATTCCTCGCT GATGCGCCTC AAGCGGCTGC CGGTACACAA GCTGAAGATC
GACCAGGGCT TCGTCGCCGG CCTGCCCGGC GCGGTGGACG ACGCCGCGAT CGCCCGTGCG
ATAGTTGCCC TGGCGCAAAG CATGGGCCTG CGGGTGGTTG CCGAGGGTAT CGAGCACCAG
GACCAGGCGC TGTTCCTGCG CGAACATGGC TGCGACTTCG GCCAAGGCTA CTGGTACGGA
CGGCCGCAAC CGGCGGAAGC GCTGCGCTTC GACCTGCCGC CCGTGGCGTT GCCGGAAGAC
TGA
 
Protein sequence
MSPRLSALRL SLAYLAIAIA WAFLSDHLLQ NQVQDHDQLV FWMTAKRLFF FAATGLLLYL 
YLVRQFRRKA QAYDELHGSE QRLNRALEAV RDGLWDWDLV TDRMFVSPGY AALIGLAPEE
LGDPIETWKK RLHPEEYATV LEAHRNHLQG LTDNLDHIYR LRHKDGDYRW IHSRGRVLRD
ALGKPLHYTG VARDITLQRL KEDHLRQAAA VFDSTREGVL VTDAQAVIVH VNPSFERITG
YRSEDVLGKT PAILRSGRQD QAFYQRLWLA LREQDVWSGE IWNRRKSGEI YPQWLHIRAV
RNDQGQLTHY VGVFSDLSSI KRSENELDFL AHHDSLTGLP NRVLLRERIE QALENGKDRT
VAGALLLIDL DHFKHINDSL GHTTGDMLLK EVSKRLQHQL DERCLLSRLG GDEFAILVEN
DDPEAVARLS QRILDGFNAP FDIHCQPIYI SASLGVSLYP EDASDVDHLM QHADAALFQA
KDSGRNAYAF YTRVLTARAR AHVQVESALR HALEHDELRV HYQPVHDLAS GRIVGVESLV
RWQHPERGLV PPGEFVPVAE ECGLIAALDN WVLKRACRQM REWQQRGVEL EFVAVNVSSR
LFNRGGLEER IANALEESGL EPRYLELEVT ESAVMEDFEQ SLNLLCRLRI LGVNLAIDDF
GTGYSSLMRL KRLPVHKLKI DQGFVAGLPG AVDDAAIARA IVALAQSMGL RVVAEGIEHQ
DQALFLREHG CDFGQGYWYG RPQPAEALRF DLPPVALPED