Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_02840 |
Symbol | pcaD |
ID | 4383642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 251329 |
End bp | 252120 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639322781 |
Product | beta-ketoadipate enol-lactone hydrolase |
Protein accession | YP_788382 |
Protein GI | 116053944 |
COG category | [R] General function prediction only |
COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
TIGRFAM ID | [TIGR02427] 3-oxoadipate enol-lactonase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.00373342 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGCCAACCG TACGCCTCGC CGACGGCGAC CTGAACTACT CCCTGGAAGG ACCGGCCGGC GCGCCGGTCC TGCTGTTGTC AAACTCGCTG GGCACCGACC TGGGCATGTG GGACACGCAG ATCCCCGCAC TCACCGCCCA CTTCCGCGTG CTGCGCTACG ACACCCGCGG CCACGGCGCC TCGCTGGTCA CCCCCGGACC GTACGCCATC GGCCAGCTCG GCGCCGACGT GCTTGCCCTG CTCGATGCCC TCGACCTGCC GCGCGTGCAT TTCTGCGGGC TATCCATGGG CGGCCTGATC GGTCAGTGGC TGGGCATCCA CGCCGGCGAG CGGCTCGGCC GGCTGGTGCT GTGCAACACT GCGGCGAAGA TCGCCAGCGA CGAGGTCTGG AACACCCGCA TCGATACCGT CCTGAAAGGC GGCGAGCAGG CCATGCGCGA CCTGCGCGAC GCCTCGGTGG CGCGCTGGTT CACCGCGGGC TTCGCCGAGC GCGAACCGGC GCAGGTCGAG CGCATCGTCG CGATGCTCGC GGCCACCTCG CCGCAGGGCT ACGCGGCCAA CTGCGCTGCG GTACGCGACG CCGACTTCCG CGAGCAGCTC GGGCTGGTCC AGGCGCCGAC GCTGATCGTC GCCGGCAGCC ACGATGCCGT GACCACTCCG GACAACGCCC GCTTCATGCA GGCGCGCATC GCCGACGCGC AGTTGGTCGA GTTCGCCGCC GCGCACCTGT CCAACGTCGA AGCGGGCGAC GCCTTCAGCC GCCGCCTGGT CGATTTCCTG CTGTCCGCCT GA
|
Protein sequence | MPTVRLADGD LNYSLEGPAG APVLLLSNSL GTDLGMWDTQ IPALTAHFRV LRYDTRGHGA SLVTPGPYAI GQLGADVLAL LDALDLPRVH FCGLSMGGLI GQWLGIHAGE RLGRLVLCNT AAKIASDEVW NTRIDTVLKG GEQAMRDLRD ASVARWFTAG FAEREPAQVE RIVAMLAATS PQGYAANCAA VRDADFREQL GLVQAPTLIV AGSHDAVTTP DNARFMQARI ADAQLVEFAA AHLSNVEAGD AFSRRLVDFL LSA
|
| |