| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_00925 |
|---|
| Symbol | |
|---|
| ID | 4384005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 92696 |
|---|
| End bp | 94045 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639322633 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_788234 |
|---|
| Protein GI | 116054405 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0257059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCCCA TCGACGATCC CTTCGGCACC CCGGCCGGCG GCGGCAACGG AAGCCCGCCC
GACGACCGCA CCATGATCAT GCCGCGTCCC GGCGGCCGCG CCCCGGAACC GGCCGGCGGC
CCCCGCGGCG GCGATCCCTA CACGCCGCCG CCGATGGCCA GCCTGGCGCC GCTGAGCGGC
CGCGGCGACG GCCTCAACCC GCTGGAGCAG GCCGCCGGCC CACTGCTGGC GATGCTCACC
CGCCTGCGCA ACACCATCGC CCATCCGGCG CCGGCCAGCC TGCGCGCGCA ACTGCTCGGC
TACCTGCGCC AGTTCGAGGA GAAGGCACGC CAGGCCGGCG TGGCGCCGGA CGAAGTGATG
CTGGCGCGCT ACGTGCTCTG CACCGCCCTC GACGAAGCGG TGCTCAGCAC GCCGTGGGGC
AGCACCAGCG ACTGGGGCAA GCAGAGCCTG CTGATCACCC TGCACAACGA GGCCTGGGGC
GGCGAGAAGG TCTTCCAGTT GCTCGAACAC TGCCTGCAGA ACCCGCACCA GCGCCTGCAC
CTGCTGGAGC TGCTGTACCT GTGCACCAGC CTCGGCTTCG AAGGCCGCTA CCGGGTCATG
CACGACGGCC GCAGCCAACT GGAGGCGCTG CGCGAGCGCA CCGCGGCGGT GATCCGCAGC
ACCCGCGGCG AGTACGAGCA CGAACTGTCG CCGCACTGGC GCGGCCTCAG CGTGATGCGC
GACCGCCTTT CGCAATACCT GCCGCCGTGG GTCGGTATCG CCATCGGCCT GGCCTTGCTG
CTGGCCTTGC TGTTCGGCCT GCGGATGAAG CTGGCCGCCG ACGCCGAGCC GGTGTTCAAG
CGCATCCACG CCATCGGCGA GATCCCGGTG CAGGCCATCG ACCGCCCAGC GGTGCAGCCG
CGGGTGATCG AACGGCCACG CCTGGCGCGC TTCCTCGCAG ACGACATCAA GGCCCAGCGG
GTGGCGGTGG AGGACGCCGT CGACCGCTCG GTGGTGACCA TCCGCGGCGA CGAGCTGTTC
GCCAGCGCCA GCGCCAGCGT GCGCGACGAG TTCCAGCCGC TGCTGCTGCG CATCGCCGAC
GCCCTGCGCA AGGTCAAGGG CCAGGTGCTG GTCACCGGCC ATAGCGACAA CCGGCCGATC
GCCACGCTGC GCTACCCGTC CAACTGGAAA CTGTCCCAGG CCCGCGCCCA GGAGGTCGCC
GACCTGCTCG GCGCGACCAC CGGCGACGCC GGCCGCTTCA CCGCCGAAGG GCGCAGCGAC
ACCGAGCCGG TGGCGACCAA CGCCAGCGCC GAAGGCCGCG CACGCAACCG CCGGGTGGAA
ATCACCGTAT TCGCGGAGGG CGCGCAATGA
|
|---|
| Protein sequence | MPPIDDPFGT PAGGGNGSPP DDRTMIMPRP GGRAPEPAGG PRGGDPYTPP PMASLAPLSG
RGDGLNPLEQ AAGPLLAMLT RLRNTIAHPA PASLRAQLLG YLRQFEEKAR QAGVAPDEVM
LARYVLCTAL DEAVLSTPWG STSDWGKQSL LITLHNEAWG GEKVFQLLEH CLQNPHQRLH
LLELLYLCTS LGFEGRYRVM HDGRSQLEAL RERTAAVIRS TRGEYEHELS PHWRGLSVMR
DRLSQYLPPW VGIAIGLALL LALLFGLRMK LAADAEPVFK RIHAIGEIPV QAIDRPAVQP
RVIERPRLAR FLADDIKAQR VAVEDAVDRS VVTIRGDELF ASASASVRDE FQPLLLRIAD
ALRKVKGQVL VTGHSDNRPI ATLRYPSNWK LSQARAQEVA DLLGATTGDA GRFTAEGRSD
TEPVATNASA EGRARNRRVE ITVFAEGAQ
|
|---|
| |