| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6585 |
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| Symbol | |
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| ID | 4315489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 1275968 |
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| End bp | 1276912 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638154429 |
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| Product | catechol 1,2-dioxygenase |
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| Protein accession | YP_778463 |
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| Protein GI | 115361326 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02439] catechol 1,2-dioxygenase, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.933821 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCA AAGTTTTCGA TACGAAGGAA GTGCAGGATC TGCTGAAGGC CGCGTCGAAC
GCGGGCGCGA ACGGCACGCA GGCCGGCAAC GCGCGCACGC AGCAGATCGT GCAGCGGCTG
CTCGGCGACC TGTTCAAGGC GATCGACGAT CTCGACATCA CGCCCGACGA AGTGTGGGCC
GGCGTGAACT ACCTGAACAA GCTCGGCCAG GACGGCGAAG CGGCGCTGCT GGCGGCCGGC
CTCGGCCTCG AGAAGTATCT CGACATCCGG ATGGACGCCG AGGACGAGGC GATCGGCCTC
GACGGCGGCA CGCCGCGCAC GATCGAAGGC CCGCTGTATG TCGCCGGCGC GCCGGTGCGC
GAAGGCGTCG CGAAGATCGA CCTCGACGCG GACGAAGGCG CGGGCCCGCT CGTGATCCAC
GGCACGGTCA CGGGGCTCGA CGGCAAGCCG GTGGCCGGCG CGCTGGTCGA GTGCTGGCAC
GCGAACTCGC ACGGCTTCTA TTCGCACTTC GACCCGACCG GCAAGCAGAG CGATTTCAAC
CTGCGCGGCG CGGTGAAGAC GGGCGCGGAC GGCAAGTACG AATTCCGCAC GCTGATGCCG
GTCGGCTACG GCTGCCCGCC GCAGGGCGCG ACGCAGCAGC TGCTGGATCG CCTCGGCCGT
CACGGCAACC GCCCGGCGCA CGTGCACTTC TTCGTGACCA GCGACGGTCA CCGCAAGCTG
ACGACGCAGT TCAACATCGA CGGCGACCCG CTGATCTGGG ATGACTTCGC GTATGCGACG
CGCGAGGAGC TGATTCCGCC CGTCACCGCC AAGACTGGCG GCGCCGCGCT CGGGCTGAAG
GCCGACGCGT ACCAGGACGT CGAGTTCAAC TTCGTCCTGA CGCCGCGCGT CGAGGGCAAG
GACAACCAGA TCGTCGAACG CCTGCGCGCT TCCGCCACGG CATAA
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| Protein sequence | MSVKVFDTKE VQDLLKAASN AGANGTQAGN ARTQQIVQRL LGDLFKAIDD LDITPDEVWA
GVNYLNKLGQ DGEAALLAAG LGLEKYLDIR MDAEDEAIGL DGGTPRTIEG PLYVAGAPVR
EGVAKIDLDA DEGAGPLVIH GTVTGLDGKP VAGALVECWH ANSHGFYSHF DPTGKQSDFN
LRGAVKTGAD GKYEFRTLMP VGYGCPPQGA TQQLLDRLGR HGNRPAHVHF FVTSDGHRKL
TTQFNIDGDP LIWDDFAYAT REELIPPVTA KTGGAALGLK ADAYQDVEFN FVLTPRVEGK
DNQIVERLRA SATA
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