| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6581 |
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| Symbol | benD |
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| ID | 4315485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 1272174 |
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| End bp | 1272950 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638154425 |
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| Product | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase |
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| Protein accession | YP_778459 |
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| Protein GI | 115361322 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0176899 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.658143 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATGC AACGATTCTC CGGAAAGGTC GTCGTCGTCA CCGGCGCGGC GCAGGGCATC
GGTCGCGGCG TCGCGCTGCG CGCGGCGGCC GAGGGCGGCC GCGTGCTGTT CGTCGATCGT
GCGGAATTCG TGGCCGAGGT GGCCGCCGAA GCGCCGGGCG GCGACACGGC CGGTTTCGTC
GCCGATCTCG AAACCTACGA CGGCGCGCAC GCGGCGATGG CGTTCGCGGT CGCGACGTTC
GGCCGGATCG ACGTGCTGAT CAACGGCGTC GGCGGCGCGA TCCGGATGCG GCCGTTCGCC
GAGTTCGAGC CCGCGCAGAT CGACGCGGAA ATCCGCCGCT CGCTGATGCC GACGCTCTAC
AGCTGCCACG CGGTGTTGCC GCATCTGCTG GCCGGGGGCG GCGGCACGAT CGTGAACGTG
TCGTCGAACG CGACGCGCGG GATTCGCCGC GTGCCGTACT CGGCCGCGAA GGGCGGCGTC
AATGCGCTGA CGGCGGCGCT CGCGATGGAA TACGCGGAGC ATGGCATCCG CGTGGTCGCG
ACCGCGCCCG GCGGCACCGC AGCGCCGCCG CGCCGCGTGC CGCGCAATGC GGCCGGCGAC
AGCGAGCAGG AACAGGCGTG GATGGCCGAA GCAGTGCGGC AGGTGACCGA CTCGACGTTC
TTCAAGCGCT ACGGCAGCCT CGACGAACAG ATCGCGCCGA TCCTGTTCCT CGCGTCCGAC
GAAGCGAGCT ACATCACCGG CACGGTGCTA CCGGTCGCGG GCGGCGATAC GGGTTGA
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| Protein sequence | MTMQRFSGKV VVVTGAAQGI GRGVALRAAA EGGRVLFVDR AEFVAEVAAE APGGDTAGFV
ADLETYDGAH AAMAFAVATF GRIDVLINGV GGAIRMRPFA EFEPAQIDAE IRRSLMPTLY
SCHAVLPHLL AGGGGTIVNV SSNATRGIRR VPYSAAKGGV NALTAALAME YAEHGIRVVA
TAPGGTAAPP RRVPRNAAGD SEQEQAWMAE AVRQVTDSTF FKRYGSLDEQ IAPILFLASD
EASYITGTVL PVAGGDTG
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