| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6576 |
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| Symbol | |
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| ID | 4315480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 1265052 |
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| End bp | 1266512 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638154420 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_778454 |
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| Protein GI | 115361317 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.189309 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTACCCA AACCCGTCGT TGCCGCGGTT CTTGTTGCCG TCCTGTTGAC GGGTTGCGCC
GTCGGTCCCG ACTACGTGCG CCCCGAGGTC GCGATGCCGC AGCGGTTCCA GGGCCAGGCC
GCCGTGGACC AGCGGCACGC GGCCGCCGAT GCCGATCTCG CGACGTGGTG GACGGGGTTC
GGCGATCCGC AACTGACGCG CTACGTCACG CTGGCCCTGG CGCAGAACCT CGATCTCGCG
CAGGCCGCGG CACGCGTCGC ACAAGCGCGC GCAGGGCTGA GTGCGGCGAA TGCGGCGCTG
CTGCCTTCGG GCGAGGTGAG TGGTCAGGCA GCGCGCGTCT ACCAGTCGGT CGAAACGCCG
TTGGGGCGTG TGCTGAACTC GGCGCCCGGT TTCGACCGTC ACGGCAGCGA CTATGAGGCC
GACTTCAACG CGAGCTGGGA GCTGGACGTG TTCGGCGGGC TGCGCCGCGG CCGCGAAGCG
GCGCTTGCCG ACTACCAGGC GTCGGAAGCC GGCGCGGTGG CGACGCGCCT TGCCGTCGCC
GCGCAAACCG CGGACATCTA CATCACGATT CGCGGGTTGC AGGGCCGGTT GAAGGTCGCG
CGGCACCAGG TGCAGACCGA GCAGGATCTG CTGTCGACCA TCAGCCTGCT GTATGGCAAG
GGGCTCGCGG CGGAGCTTCA GGTCAGGCAG GCCGAAGGCG CGCTCGCGCA GGTTCGCGCG
ACGGTGCCCG TGCTCGAGGC GGCGCTGGAC ACGGCGATGA ACGCGCTCGA CGTGATGCTC
GGTTCGCAGC CCGGCACGCA TCGGGCGGAA TTGCTCGACG GCGGCGACGT GCCGGTCGCG
CCGCGGATCG CGGCGACGGG AACGCCCGGT GAACTGCTCA GGCGGCGGCC CGACCTGATC
GTGGCCGAGC GGCGCGTGGC GGCGGCGAAC GCGCGCATCG GCATGGCCGT CGCCGAGTAT
TACCCGAAGT TCTCGCTGAG CGGGCTGATC GGCAGCGCGA CGACGATGGG CGCGGGCAAT
CTGTTTACCG GCGGCGCCAA CCAGGCCGCG GGCGTGCTCG GCCTGCGCTG GCGTCTGTTC
GACTTCGGCC GGATCAATGC GCAGATCGCG CAGGCCAAAG GACAGGATGC GGAAATGCTG
GCCGCGTATC GGCTCGCGGC GCTGCACGCG ACCGAGGACG TCGAAAACGC GTTCTCGGCG
CTCGTCAAGC GCGACGAGCA GGCAGCAGTT CTTGGCGGCG GCGTGGATTC GCTTGGGCGA
GCGAGAGCCG CGTCGTTTGC TGCGTACCAG AAAGGCGTCG TCAGCCTGAT CGAGGTGCTG
CAGGCCGACG AAAACCTGCT GCGCGCGTCC GACCAACGCG TGCAGGCGCA AACCGAATCC
GCACGCGCGG CGGTTGCCGC GTTCAAGGCG CTCGGTGGTG GGTGGCAGGC GCAGGGATCG
GAAGCGGTGG CCATGCGGTA G
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| Protein sequence | MLPKPVVAAV LVAVLLTGCA VGPDYVRPEV AMPQRFQGQA AVDQRHAAAD ADLATWWTGF
GDPQLTRYVT LALAQNLDLA QAAARVAQAR AGLSAANAAL LPSGEVSGQA ARVYQSVETP
LGRVLNSAPG FDRHGSDYEA DFNASWELDV FGGLRRGREA ALADYQASEA GAVATRLAVA
AQTADIYITI RGLQGRLKVA RHQVQTEQDL LSTISLLYGK GLAAELQVRQ AEGALAQVRA
TVPVLEAALD TAMNALDVML GSQPGTHRAE LLDGGDVPVA PRIAATGTPG ELLRRRPDLI
VAERRVAAAN ARIGMAVAEY YPKFSLSGLI GSATTMGAGN LFTGGANQAA GVLGLRWRLF
DFGRINAQIA QAKGQDAEML AAYRLAALHA TEDVENAFSA LVKRDEQAAV LGGGVDSLGR
ARAASFAAYQ KGVVSLIEVL QADENLLRAS DQRVQAQTES ARAAVAAFKA LGGGWQAQGS
EAVAMR
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