Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_6576 |
Symbol | |
ID | 4315480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | - |
Start bp | 1265052 |
End bp | 1266512 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 638154420 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_778454 |
Protein GI | 115361317 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.189309 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACCCA AACCCGTCGT TGCCGCGGTT CTTGTTGCCG TCCTGTTGAC GGGTTGCGCC GTCGGTCCCG ACTACGTGCG CCCCGAGGTC GCGATGCCGC AGCGGTTCCA GGGCCAGGCC GCCGTGGACC AGCGGCACGC GGCCGCCGAT GCCGATCTCG CGACGTGGTG GACGGGGTTC GGCGATCCGC AACTGACGCG CTACGTCACG CTGGCCCTGG CGCAGAACCT CGATCTCGCG CAGGCCGCGG CACGCGTCGC ACAAGCGCGC GCAGGGCTGA GTGCGGCGAA TGCGGCGCTG CTGCCTTCGG GCGAGGTGAG TGGTCAGGCA GCGCGCGTCT ACCAGTCGGT CGAAACGCCG TTGGGGCGTG TGCTGAACTC GGCGCCCGGT TTCGACCGTC ACGGCAGCGA CTATGAGGCC GACTTCAACG CGAGCTGGGA GCTGGACGTG TTCGGCGGGC TGCGCCGCGG CCGCGAAGCG GCGCTTGCCG ACTACCAGGC GTCGGAAGCC GGCGCGGTGG CGACGCGCCT TGCCGTCGCC GCGCAAACCG CGGACATCTA CATCACGATT CGCGGGTTGC AGGGCCGGTT GAAGGTCGCG CGGCACCAGG TGCAGACCGA GCAGGATCTG CTGTCGACCA TCAGCCTGCT GTATGGCAAG GGGCTCGCGG CGGAGCTTCA GGTCAGGCAG GCCGAAGGCG CGCTCGCGCA GGTTCGCGCG ACGGTGCCCG TGCTCGAGGC GGCGCTGGAC ACGGCGATGA ACGCGCTCGA CGTGATGCTC GGTTCGCAGC CCGGCACGCA TCGGGCGGAA TTGCTCGACG GCGGCGACGT GCCGGTCGCG CCGCGGATCG CGGCGACGGG AACGCCCGGT GAACTGCTCA GGCGGCGGCC CGACCTGATC GTGGCCGAGC GGCGCGTGGC GGCGGCGAAC GCGCGCATCG GCATGGCCGT CGCCGAGTAT TACCCGAAGT TCTCGCTGAG CGGGCTGATC GGCAGCGCGA CGACGATGGG CGCGGGCAAT CTGTTTACCG GCGGCGCCAA CCAGGCCGCG GGCGTGCTCG GCCTGCGCTG GCGTCTGTTC GACTTCGGCC GGATCAATGC GCAGATCGCG CAGGCCAAAG GACAGGATGC GGAAATGCTG GCCGCGTATC GGCTCGCGGC GCTGCACGCG ACCGAGGACG TCGAAAACGC GTTCTCGGCG CTCGTCAAGC GCGACGAGCA GGCAGCAGTT CTTGGCGGCG GCGTGGATTC GCTTGGGCGA GCGAGAGCCG CGTCGTTTGC TGCGTACCAG AAAGGCGTCG TCAGCCTGAT CGAGGTGCTG CAGGCCGACG AAAACCTGCT GCGCGCGTCC GACCAACGCG TGCAGGCGCA AACCGAATCC GCACGCGCGG CGGTTGCCGC GTTCAAGGCG CTCGGTGGTG GGTGGCAGGC GCAGGGATCG GAAGCGGTGG CCATGCGGTA G
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Protein sequence | MLPKPVVAAV LVAVLLTGCA VGPDYVRPEV AMPQRFQGQA AVDQRHAAAD ADLATWWTGF GDPQLTRYVT LALAQNLDLA QAAARVAQAR AGLSAANAAL LPSGEVSGQA ARVYQSVETP LGRVLNSAPG FDRHGSDYEA DFNASWELDV FGGLRRGREA ALADYQASEA GAVATRLAVA AQTADIYITI RGLQGRLKVA RHQVQTEQDL LSTISLLYGK GLAAELQVRQ AEGALAQVRA TVPVLEAALD TAMNALDVML GSQPGTHRAE LLDGGDVPVA PRIAATGTPG ELLRRRPDLI VAERRVAAAN ARIGMAVAEY YPKFSLSGLI GSATTMGAGN LFTGGANQAA GVLGLRWRLF DFGRINAQIA QAKGQDAEML AAYRLAALHA TEDVENAFSA LVKRDEQAAV LGGGVDSLGR ARAASFAAYQ KGVVSLIEVL QADENLLRAS DQRVQAQTES ARAAVAAFKA LGGGWQAQGS EAVAMR
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