| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6573 |
|---|
| Symbol | |
|---|
| ID | 4315477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 1260321 |
|---|
| End bp | 1262969 |
|---|
| Gene Length | 2649 bp |
|---|
| Protein Length | 882 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638154417 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_778451 |
|---|
| Protein GI | 115361314 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1
[COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0983225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTTG CCCACGACAC GCCCACCGCG CCCACCGCGC TCAGCCGCGT GCCCGACCTC
GGCGACGCGC CGCCGGGCTC CGCGCACGAG CGCGCGCTCG CCGCGCTGTG GGAATCGGAA
CCCGGCTGGC GCGGCTGGCT CGGCACGGTC GATCACAAGC GCATCGGGCT GCGCTACATC
GTCACCGCCT TCGCGTTCCT GCTGCTCGGC GGCGTCGAGG CGCTCGTGAT GCGCATCCAG
CTCGCGCGCC CGAACGCAAC GGTGCTCACG CCCGCGCAGT ACGACGCGCT GTTCACGATG
CACGGCGTCA CGATGATCTT CCTGTACGCG CTGCCGGTGC TGTCCGGCTT CGCGAACTAT
CTGTGGCCGC TGATGCTCGG CTCGCGCGAC ATGGCGTTCC CGCGGCTCAA TGCGTTCTCG
TACTGGGCGT TCCTGTTCGC CGGGCTGTTC CTGTATGCAA GCTTTCCGCT CGGCGCGGTG
CCCGACGGCG GCTGGTTCAA CTACGTGCCG CTCACGTCGC TCGACTACAG CGCCGGCGCG
AACATCGACA TCTATGCGCT CGGGATGATC CTGCTCGGCA TCTCGACGAC CGGCGGCGCG
GCGAACTTCG TCGTCACGCT GCTGCGCATG CGCGCGCACG GGATGTCGAT CGACCGGCTG
CCGATCATCG TATGGGGCAC GCTGACCGCA TCGGTCGCGA ACCTCGTCGC GGTGCCGTCG
GTGAGCCTCG CGTTCCTGCT GCTGTGGCTC GACCGCAATG CCGGCACGCA CTTCTTCGAC
GTCGCGAACG GCGGCCGGCC GCTGCTGTGG CAGCACCTGT TCTGGATGTT CGCGCACCCG
TGGGTGTACG TGGTCGTGCT GCCCGCGATG GGGATCGTGT CGGATGCGCT GCCGACCTTC
TGCCGGCGGC CGCTCGTCGC GTACGAGGCC GTTGCGGTGT CGACGGTCGC GACGATGCTG
ATCGGCTTCG AGGTGTGGGT GCATCACATG TTCGCGACCG GCATCGCGCC GCTCGCGCTC
GCGTTCTTCG GCGCGGCGAG CATGCTGATC TCGATCCCGA GCGCGGTCGC GGTGTTCGCG
TGGCTCGCGA CGATCTGGAC CGGCCGGCCC GTGTTCCGCA CGCCGTTTCT GTATTTCGCG
GGCTTCGTGC TGATGTTCGT GGTCGGCGGC GTGTCCGGCG TGATGACGGC AGCGGTGCCG
CTCGACTGGC AGTTGACCGA CACGTATTTC GTCGTCGCGC ATCTGCATTA CGTGCTGCTC
GGCATCAACG TGTTCCCGGT ACTCGGCGGC GTCACGTACT GGTTCCCGAA GTTCACCGGG
CGGATGATGA ACGAGCGCTT CGGACGCCTG ACGTTCTGGG TCGTGCTGGT CGGCTTCAAC
CTCGGCTTCT TCCCGATGCA CGTCGCCGGG CTGCTCGGGA TGCCGCGCCG CATCTATACC
TATCCGTCCG GGATGGGGTG GGACACGTCG AACCTGCTGA CCACGATCGG CTCGTTCATT
TTCGGCATCG GCATCGTGAT GTTCGTCGTC AACGCGCTCG TCAGCGCGCG GCGCGGCGCG
CGTGCCGGCG AGAATCCGTG GGGCGGCGCC GGACTCGAAT GGTCGGTCGC GTCGCCCACG
CCCGTGTACA ACTTCGCGGT GCTGCCGCTC GTCGGCTCGC GGCATCCGCT GTGGGAAACG
CGCGACGATC CGAAGCGCAC CAGCCTGCGG GTCGGCTACC GGCTCGCCAA CGGCCGCGAG
GCGCTCGCCG TCACGCCGCT CGCGGCGGCG CCGAGCGCGA TCCTGAAGAT GCCGGAGGAC
ACCTGCGTGC CGTTCGTGCT GGCGCTGCTT GCGACGGCTG TGTTCGCGGC GATGCTCGCG
CGCTCGCCGA CGCTCGTGTG CGTGGCCGTC GCCGGGTGCG CGATCGCGAA CGCCGTCTGG
CTGTGGCCGC GCGGCACGCT CGGGCAGCGC GCGCACCTGC CGGCCCGCGA CGACACGCAG
GCGCCGTCGG CCGCGGCCGG CGCGCATCCG GACGAACCGT CGCCGGCCAC GACGCCGGCG
GGCGCGCCGG CCGCGTGCGT CGAACCGCTG CCGGTCGGCA GTTGCGGCGA ACGCGCGGGC
GGCTGGTGGG GTGTCATCAC GCTGATCGTG ACCGAGGCCG GCCTGTTCGG CTATCTGCTG
TTCTGCTACT TCTATCTGCA ATCGCAATCG TCCGCGCCGT GGCCGCCCGA AGGGATGCCG
AAGATCGGCC TCGCGGCCGG CAACACGGTC GTGCTGCTGT CGAGCAGCGT GTTCGTGTGG
CTCGCCGAGC GCGCGGTGCG GGCCGACAAG CGGCCGCACG CGGTGGCCGC GCTCGCCGTC
GCGCTGGTGC TCGGCATCGC ATTCGCGCTC GTTCAACTGC ACGAGTGGCG CGACCATCCG
TATGGCCCGA CCGTACACCT GTACGGCAGC CTGTACTTCA CGATCACCGG CTTTCACCTC
GCGCACGTGG TGGCCGGGCT CGTGATCCTC GCGCTGCTCG CCGGCTGGAC GGCCGCCGGC
TTCTTCAGCG GCGAGCGGCG CGTCGCGCTG ACGGTCGGAG GGCTCTACTG GCACTTCGTC
GACATCGTGT GGCTGTTCAT CTTCACCGCG CTGTACGTGT CGCCGTACTG GCTCAGGAGG
TCGGGATGA
|
|---|
| Protein sequence | MAVAHDTPTA PTALSRVPDL GDAPPGSAHE RALAALWESE PGWRGWLGTV DHKRIGLRYI
VTAFAFLLLG GVEALVMRIQ LARPNATVLT PAQYDALFTM HGVTMIFLYA LPVLSGFANY
LWPLMLGSRD MAFPRLNAFS YWAFLFAGLF LYASFPLGAV PDGGWFNYVP LTSLDYSAGA
NIDIYALGMI LLGISTTGGA ANFVVTLLRM RAHGMSIDRL PIIVWGTLTA SVANLVAVPS
VSLAFLLLWL DRNAGTHFFD VANGGRPLLW QHLFWMFAHP WVYVVVLPAM GIVSDALPTF
CRRPLVAYEA VAVSTVATML IGFEVWVHHM FATGIAPLAL AFFGAASMLI SIPSAVAVFA
WLATIWTGRP VFRTPFLYFA GFVLMFVVGG VSGVMTAAVP LDWQLTDTYF VVAHLHYVLL
GINVFPVLGG VTYWFPKFTG RMMNERFGRL TFWVVLVGFN LGFFPMHVAG LLGMPRRIYT
YPSGMGWDTS NLLTTIGSFI FGIGIVMFVV NALVSARRGA RAGENPWGGA GLEWSVASPT
PVYNFAVLPL VGSRHPLWET RDDPKRTSLR VGYRLANGRE ALAVTPLAAA PSAILKMPED
TCVPFVLALL ATAVFAAMLA RSPTLVCVAV AGCAIANAVW LWPRGTLGQR AHLPARDDTQ
APSAAAGAHP DEPSPATTPA GAPAACVEPL PVGSCGERAG GWWGVITLIV TEAGLFGYLL
FCYFYLQSQS SAPWPPEGMP KIGLAAGNTV VLLSSSVFVW LAERAVRADK RPHAVAALAV
ALVLGIAFAL VQLHEWRDHP YGPTVHLYGS LYFTITGFHL AHVVAGLVIL ALLAGWTAAG
FFSGERRVAL TVGGLYWHFV DIVWLFIFTA LYVSPYWLRR SG
|
|---|
| |