| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6558 |
|---|
| Symbol | |
|---|
| ID | 4315462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 1241933 |
|---|
| End bp | 1243708 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638154402 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_778436 |
|---|
| Protein GI | 115361299 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGA ATCGACAGCG CGGCAGCCGC CGGCATGCGC TGCAACCGCT CGGCCTCGCC
GCGATGCTGG CGGCCTGCGC GGCGCTCGCG GGCTGTACCG TCGGGCCGGA TTTCAAGCCG
CCGCAGGCGG ATGTGCCGGC GAACTGGCAT GACCTGCGGG CGTCGGCTGC GGCGGGATCG
CCGGCGTCGG GCGCATCGCC GGCATCGGGT GAATCGGGCG TGTCGGGCGC ATCGGGTGCA
TCGGGTGCGG CGGCCGCATC GGGTACATCG GGTACATCGC GCGCGTCGGC CGCCGGCGCG
CACGCGCCAT CGTCGCCGAC GACCGGCGCC GATCCCGCCC CGCGCTGGTG GCGCGCGTTC
GGCGATCCGC TGCTCGATCG CCTCGTCGAG CGTGCCGCGC GCGACAACCT CGACGTGCAG
GCGGCCGTGC TGCGCATCGC GCAGGCGCGT GCGCAGGTTC GCGCGGCCGC CGCGCAGGGC
TTGCCGAACG TGCGGGCGAA CGCGAGCTAT CAGCGCGAAC AGTTGGGCCT GAAAGGCATC
ATCGAGGAAC AGGGTATCGA CCAGCGCGTC GATCGTCTCG GCGCGCCCGG TTCACCGCTC
GACCGCTTCG GGCCGGGCAC CGGCGCGAGC GTGCAGCAGG GCGCACGCGC CGCGATCGAT
TCGCTCGAAG CGCCGGTCAA TGTGTGGCAG GCCGGGTTCG ACGCATCGTG GGAACTCGAC
CTGTTCGGGC GCGTGCGTCG CTCGGTCGAA TCGGCCGGCG CGCAGGCGAG CGCCGCGGTC
GCGAGCCGCG ACGATGCGCT GCTGTCGCTG GAGGCCGAAG TCGCGCAGAC CTATCTGCAA
CTGCGCGGCG CCGAAGCGCA ACGCGCGCTG GCCGACGACC TGCAACGCGC GCAGCGCGAC
CTGCTGGATC TCACGCGCGA GCAGGCCGCG CACGGTCTCG CGAGCGACCT CGACGTGCGC
AGCGCCGACG CGCGGCTCGC GCAGATTCGT GCGCAGCTGC CGCAGTTCGA CCAGCAGATC
GTGCTGCTGC GCAATGGCCT CGCGTATTTG GTCGGAGGGG CCCCGGGCGC GCTCGACGAC
TGGCTCGACG CGCCGCGCGC GTTGCCGGGC GTGCCGCCCA CCGTGCCGGT GGGGCTGCCG
TCGACGCTGG CGCGCCGGCG GCCCGACATT CGCCGCGCGG AGGCCGAGCT GCATGCGGCG
ACCGCCGATG TCGGCGTCGC GGTCGCGCAG TTCTATCCGG ACATCTCGCT GACCGGGCAG
GTCGGGTTGC GCGCGGCGCA CGTGCGCGAG CTCGCGCACT GGTCGCATCT GTTCTACTCG
TTCGGGCCGG CCGTATCGCT GCCGATTTTT TCGGGCGGGC AACTCGTATC GAACCTGCGG
CTATCGCAGG CGCGCCAGGC CGAAGCGGCG CTCGCCTATC GACGGGCCGT GCTCGTCGCG
CTGCGCGACG TCGACAACGC GCTGGCCGTC TACCGCACCG ACCAGGCGCG CGCGGCCGCG
CTCGACGACG CGGTCAAGGC CGAGCAGGGC GCGCTGGAAC TCGCGCGCGA TCGTTACCGG
AAGGGGTTGT CGCCGTTCCT CGACGTGCTC GACGCCGAGC GGCAATGGTC GGAGGGGCGG
CAGCAGGCGG TGCAGGGGGC GTTGCAGACG ACGACCGATC TCGTCGCGCT GTACAAGGCG
CTGGGCGGCG GCTGGCAGAC GACCGGGCCG GCGGCGGATG CGGCTACGGT CGGCGCGGTG
GCGCCATCGC GAGCCGATAT GACGCGGGCG CAATAG
|
|---|
| Protein sequence | MTMNRQRGSR RHALQPLGLA AMLAACAALA GCTVGPDFKP PQADVPANWH DLRASAAAGS
PASGASPASG ESGVSGASGA SGAAAASGTS GTSRASAAGA HAPSSPTTGA DPAPRWWRAF
GDPLLDRLVE RAARDNLDVQ AAVLRIAQAR AQVRAAAAQG LPNVRANASY QREQLGLKGI
IEEQGIDQRV DRLGAPGSPL DRFGPGTGAS VQQGARAAID SLEAPVNVWQ AGFDASWELD
LFGRVRRSVE SAGAQASAAV ASRDDALLSL EAEVAQTYLQ LRGAEAQRAL ADDLQRAQRD
LLDLTREQAA HGLASDLDVR SADARLAQIR AQLPQFDQQI VLLRNGLAYL VGGAPGALDD
WLDAPRALPG VPPTVPVGLP STLARRRPDI RRAEAELHAA TADVGVAVAQ FYPDISLTGQ
VGLRAAHVRE LAHWSHLFYS FGPAVSLPIF SGGQLVSNLR LSQARQAEAA LAYRRAVLVA
LRDVDNALAV YRTDQARAAA LDDAVKAEQG ALELARDRYR KGLSPFLDVL DAERQWSEGR
QQAVQGALQT TTDLVALYKA LGGGWQTTGP AADAATVGAV APSRADMTRA Q
|
|---|
| |