| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6540 |
|---|
| Symbol | |
|---|
| ID | 4315444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 1227326 |
|---|
| End bp | 1228630 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638154384 |
|---|
| Product | HipA domain-containing protein |
|---|
| Protein accession | YP_778418 |
|---|
| Protein GI | 115361281 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3550] Uncharacterized protein related to capsule biosynthesis enzymes |
|---|
| TIGRFAM ID | [TIGR03071] HipA N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCTA GAACGCTGAT CGCGTCCGCC AACGGCGTGC GCATGGGCAC GCTGACCGAC
GACAAAGGTA TCTGGTCGTT CGCGTACGAT CCGCAGTGGC TCGCGTCCGC GGCCGCGTAC
CCGCTGTCGC CGGCGTTCGC GCTGCGCGCG GACACCTTCA CCGACACGTC GACCGATCGC
CCTGTGCAGT GGTTCTTCGA CAACCTGCTG CCCGAGGAAG GCATGCGCAT GTCGCTCGCC
CGCGAGGCGA AGGTCGATGC CGCCGACGCA TGGGGCCTGC TCGCATACTT CGGGCGCGAA
TCGGCCGGCG CGCTGACGCT GCTCGCCGAC GGCGAGCGGG AAGCGCCCGG CAGCCTGCAG
CCGCTGTCGC TCGACGAACT CGAGCGCCGG ATCCAGGCGA TGCCCGAGCG CGCGCTGACG
GCCACCGCGC CCAAGCGCAT GTCGGCGGCC GGCGCGCAGC AGAAGCTGCT GCTGGTGCTG
CGCGGCGACG CGCCCGACTA CACGCTGTAC GAGCCGGTCG GCAGCGAGCC GTCGATGCAT
CTGCTCAAGC CGGACATGCG CGCGGCCGGC TACCCGCACT CGGCGATCAA CGAATTCTTC
TGCATGAAGC TCGCGAGGAA GATGGGGCTC GACGTGCCCG ACGTGCACTT CCTGCGCGCG
CCGTCCGCGT GCTACGTGAT CGACCGGTTC GACCGCGACG TCGCGTCGGC GCCGGCCGGG
CGCGTGCATA CGATCGACGC GATGCAGTTG CTCAACTACG ACCGCGGCTT CAAGTACCAG
CGGGCGAATG CGCAGGAACT TGCCCGCGCG ATCGACCGCA CCAGCACGCG CGCGCTGGCG
CGCCTGTCGG TGTTCCGCTG GACCGTGTTC AACGTGGTGG TCGGCAATGC CGACGCGCAT
CTGAAGAACC TGTCGTTCTT CGTCGACGCG CGCGGCTACC GGCTCGCGCC GTTCTACGAC
ATCGTCAGCA CGGTCGTGTA TCACACGCCG ACGCACCGGC CCGACCATCG CGGCGATCAT
TGGCCGCACT GCGAACTGAC GATGCCGCTC GGCAACGCGA CGCGGTTTGC CGATATCGAT
GTGGATGCGT TGATCGCATT CGGCGAGGCG CTCGGGCTCA GAGGCAAGGC GGCGGCCAGC
GAACTGCGGC GCTTTCTCGA GCCGCTCGAT CGCCACGTCG TGCTGACGCT CGACGAAGTG
CGGGAGATCG CGCGGCCGGA CGCGGGGGAG ATGCGGTTGC TGAATTCGAT CGTCGCGATG
CCGATCGCGG AGATGGGGCG GGCGCTTCGG TCGATGCGGG AGTGA
|
|---|
| Protein sequence | MAARTLIASA NGVRMGTLTD DKGIWSFAYD PQWLASAAAY PLSPAFALRA DTFTDTSTDR
PVQWFFDNLL PEEGMRMSLA REAKVDAADA WGLLAYFGRE SAGALTLLAD GEREAPGSLQ
PLSLDELERR IQAMPERALT ATAPKRMSAA GAQQKLLLVL RGDAPDYTLY EPVGSEPSMH
LLKPDMRAAG YPHSAINEFF CMKLARKMGL DVPDVHFLRA PSACYVIDRF DRDVASAPAG
RVHTIDAMQL LNYDRGFKYQ RANAQELARA IDRTSTRALA RLSVFRWTVF NVVVGNADAH
LKNLSFFVDA RGYRLAPFYD IVSTVVYHTP THRPDHRGDH WPHCELTMPL GNATRFADID
VDALIAFGEA LGLRGKAAAS ELRRFLEPLD RHVVLTLDEV REIARPDAGE MRLLNSIVAM
PIAEMGRALR SMRE
|
|---|
| |