| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6535 |
|---|
| Symbol | |
|---|
| ID | 4315439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 1221377 |
|---|
| End bp | 1222432 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638154379 |
|---|
| Product | ABC transporter substrate binding protein |
|---|
| Protein accession | YP_778413 |
|---|
| Protein GI | 115361276 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTC CGCTTTCGCC GGCACTGCGC CGCACGACCC GGCTCGCGCG CCGCGCGCTG
GCCGCCACGC TCACCGCCGC GCTGGCGTTC GCCGCCGCCG GCACGCCGCA AGCCGCGCAC
GCGGAAGGCC GCATCCGCAT CGCCGAGCAG TTCGGCGTGG TCTACCTGAT GCTGAACGTC
GCGCGCGACC AGCAACTGAT CGAGAAGGAA GGGCGCAAGG CCGGCATCGA CATCAAGGTC
GACTGGGTGC GGCTGTCGGG CGGGGCGGCT GTGAACGACG CGCTGCTGTC GGGCGCGGTC
GATATCGCCG GTGCGGGCGT CGGGCCGCTG CTGACCGTGT GGGATCGCAC GCGCGGCCGG
CAGAACGTGA AGGGCGTCGC GTCGCTCGGC AATTTTCCGT ATTACCTCGT CAGCAGCAAC
CCGAACGTGA AGACGATCGC CGACCTGGGC GCGAAGGACC GCATCGCGGT GCCGGCCGTC
GGCGTGTCGG TGCAGTCGCG CGTGCTGCAG TACGCGGCCG CGAAGCAGTG GGGCGACAAG
CAGTTCGACA AGCTCGATCC GCTGACCCAG GCGATCCCGC ATCCCGATGC GACGGCCGCG
ATCCTCGCGA ACAGCAACGT GATTACCGGG CACTTCGGCA ATCCGCCGTT CCAGGAGCAG
GAACTCGCGG GCAATCCGAA CGCGCACATC GTGCTGAATT CCTACGACGT GCTCGGCGGC
CCGAGTTCCG CGACAGTGCT GTACGCGACC GCTAAATTCC GCGACGACAA CCCGAAGACG
TACCGTGCGT TCGTCGCCGC GCTCGCCGAC GCGGCTCGCC AGATCGCCGC CGATCCCGAG
CGCGCGGCCG ACACCTATAT CCGCGTGAAC GGGTCGAAGA TCGATCGCGC ATTGCTGCTG
AAGATCCTGC GCAATCCGCA GGTGCAGTTC AAGACGGCTC CGCAGAACAC GCTGAAGCTC
GCGCAGTTCA TGTATCGCAC CGGTGCGATC CGCAACGAGC CGAAGTCGTG GCGCGACTAC
TTCTTCGACG ATCCGGCGAG GGCCGGCGGC AGTTGA
|
|---|
| Protein sequence | MSFPLSPALR RTTRLARRAL AATLTAALAF AAAGTPQAAH AEGRIRIAEQ FGVVYLMLNV
ARDQQLIEKE GRKAGIDIKV DWVRLSGGAA VNDALLSGAV DIAGAGVGPL LTVWDRTRGR
QNVKGVASLG NFPYYLVSSN PNVKTIADLG AKDRIAVPAV GVSVQSRVLQ YAAAKQWGDK
QFDKLDPLTQ AIPHPDATAA ILANSNVITG HFGNPPFQEQ ELAGNPNAHI VLNSYDVLGG
PSSATVLYAT AKFRDDNPKT YRAFVAALAD AARQIAADPE RAADTYIRVN GSKIDRALLL
KILRNPQVQF KTAPQNTLKL AQFMYRTGAI RNEPKSWRDY FFDDPARAGG S
|
|---|
| |