Gene Bamb_6501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_6501 
Symbol 
ID4315405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008392 
Strand
Start bp1182621 
End bp1185335 
Gene Length2715 bp 
Protein Length904 aa 
Translation table11 
GC content63% 
IMG OID638154345 
Product2-oxoacid dehydrogenase subunit E1 
Protein accessionYP_778379 
Protein GI115361242 
COG category[C] Energy production and conversion 
COG ID[COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component 
TIGRFAM ID[TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type
[TIGR03186] alpha-ketoglutarate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACT TATCGACGGC GACACCCTCG ATCCTTTCCC TGGGCCAGAC GAAAGTCGAC 
GACGACCCGC TCGAAACCGC CGAATGGCTC GACGCGCTCG ATGGCGTGGT TCGGCATGCA
GGTGCCGAAC GTGCTCAGTA CCTGTTCGAT CGGCTCGCGG CCCACGCTTC GTCCAACGGT
ATCGCAACGG CGCGCCTCAA TATCACGCCC TACGCGAATA CGATTGCCGT CGATCAGCAG
CCGCCGTATC CGGGCGACTT CGATATCGAA GAAAAGCTTG CCGCCGCGCT GCGCTGGAAT
GCGCTGGCCA TGGTGGTGCG GGCCAATCGC GCCTACGGTG AGCTCGGCGG GCATATTGCC
AGCTATGCGT CGGCGGCCGA CCTGTTCGAA GTGGGCTTCA ATCATTTCTT TCGTGGCCCG
AATGATGCCC ACGGTGGCGA TCTCGTCTAT TTTCAACCTC ATTCCGCGCC GGGCGTTTAC
GCGCGGGCTT ACCTCGAAGG CTTTCTCGAC GACGCGCATC TCGAGCATTA CCGACAGGAA
ATCACAGGTG CGGGCCTGTG TTCCTACCCG CATCCGTGGC TGATGCCGGA CTTCTGGCAG
TTCCCGACCG GCTCGATGGG CATTGGGCCG ATCAACTCGA TCTACCAGGC GCGTTTCATG
CGTTATCTGC AGAACCGCGG ACTGCAACGC ACGGAAGGCC GCAAGGTATG GGGCTATTTC
GGCGATGGCG AGATGGATGA ACCCGAGGCG ATCGGTGCGC TTTCGCTGGC AGCGCGCGAG
CGACTCGACA ATCTCGTGTT CGTGATCAAC TGCAATTTGC AGCGGCTCGA CGGACCGGTG
CGCGGCAATG GCCGCATCAT CGACGAACTC GAAGCGCAGT TCACGGGGGC GGGCTGGAAC
GTCATCAAGG TGTTGTGGGG TTCGGACTGG GACGCCCTGT TTGCACGTGA TCGCACCGGG
GCGCTGTTGC GCGCGTTCGC GCACACCGTG GACGGCCAGT TCCAGACCTT TTCCGCCAAC
GACGGCGCCT ACAATCGTGA ACGCTTTTTC GGTCAGAACG CCGAACTGGC CGCGCTCGCC
GCGCATCTGA GCAACGACGA TATCGACCGC CTGCGCCGCG GCGGCCACGA TGTGCGCAAA
TTGCACGCTG CGTACGAAAA GGCGTCGAAA CACAGCGGGC AACCTACGGT CATTCTCGCG
AAGACGATGA AGGGCTTCGG CATGGGCGCG ATCGGCCAGG GGCGCATGAC GACACATCAG
CAAAAGAAGC TCGACATCGA CCAGTTGAAG GCGTTTCGCG ACCGCTTTCG CCTGCCACTC
TCCGACGACG ATGTCGAACA ACTCAAGTTC TACAAACCGG ACGACAGCAG TGCCGTCATG
CAGTATCTGC ACGCGCGCCG TGCGGCGCTG GGCGGCTACC TTCCCCGAAG GCGCACATCG
GCATCGCACG CGCCGGCCGT GCCCGCGATG TCGTCGTGGG GACGATTCGC GCTCGACACC
AACGACAAGG AAATGTCGAC CACGATGGCG TTCGTGCGCA TGCTCGGCAA CCTGTTGAAG
GACGCCGAGC TGGGGCCGCG TGTGGTGCCC GTCGTCGCCG ACGAGGCGCG GACCTTCGGC
ATGGCGAATC TGTTCCGGCA AGTCGGCATC TATTCTCCGC TCGGTCAACT GTACGAGCCG
GAAGACATGG GTTCGATGCT CTACTACCGT GAAGATACGG GCGGCCAGAT TCTGGAAGAG
GGCATCTCCG AGGCGGGCGC GGTGTCGTCG TGGATTGCCG CGGCGACGTC ATACAGCGTG
CACGATCTGA CGATGCTGCC GTTTTATATC TACTACTCGA TGTTCGGTTT CCAGCGTATC
GGCGACCTGA TCTGGGCGGC TGCCGACCAG CGCGCGCGCG GTTTCCTGAT CGGCGCGACG
GCCGGCAAGA CGACGCTCGG TGGTGAAGGT CTGCAGCATC AAGACGGCAC GAGTCACCTT
GCGGCCTCGA CGATACCGAA CTGCCGTGCG TACGATCCGG CCTTCGCGTA CGAAGTGGCG
ATGATCGTCG ACGAAGGCAT GCAGGAGATG ATCACGCGTC AGCGCGACGT GTTTTACTAC
ATGACGGTCA CCAACGAAAA CTACGCGCAA CGTTCGTTGA CTGAAGCGGA TGTCGATCGC
GTCCGGCGCG GCGTGCTCAA GGGGATGTAC GTGCTGGAGC CCGCGCAGGT CGAGATCGCG
CAGGTGCAGT TGCTCGGCTC GGGCGCGATT CTCGGTGAAG TCCAGGCCGC GGCACGGATG
TTGAAAGACG ACTGGAATAT CGACGCGGCT GTCTGGAGCG TGACGAGCTT TACCGAATTG
CATCGCGACG GCGTGTCCGC GGAGCGCGCG CAGCGGCTGG TGGAGCGCGG CGAGACTGCG
GTGCCCTACG TGACGGCGGC CCTGGGCGCC GCGCGTGGGC CGGTGATCGC CGCGACCGAC
TATGTGCGCG CCGTGCCCGA ACTGATCCGC GCGTACGTAC CGTCCCGCTA TGTCGTGCTC
GGCACCGACG GCTTCGGGCG CAGCGATACA CGTGCGGCGT TGCGTGCGTT CTTCGAAGTG
GACCGTGCGT CGATCGTGAT CGCCGCGCTG AAAGCACTCG TCGACGAAGG CCAGCAGGAC
CCTGACATCG TGCGTCAGGC GATCGACCGA TACGGGCGAA TCGGAAGCGG GCTGATCGAA
CCCTGGCTTG TCTAG
 
Protein sequence
MTDLSTATPS ILSLGQTKVD DDPLETAEWL DALDGVVRHA GAERAQYLFD RLAAHASSNG 
IATARLNITP YANTIAVDQQ PPYPGDFDIE EKLAAALRWN ALAMVVRANR AYGELGGHIA
SYASAADLFE VGFNHFFRGP NDAHGGDLVY FQPHSAPGVY ARAYLEGFLD DAHLEHYRQE
ITGAGLCSYP HPWLMPDFWQ FPTGSMGIGP INSIYQARFM RYLQNRGLQR TEGRKVWGYF
GDGEMDEPEA IGALSLAARE RLDNLVFVIN CNLQRLDGPV RGNGRIIDEL EAQFTGAGWN
VIKVLWGSDW DALFARDRTG ALLRAFAHTV DGQFQTFSAN DGAYNRERFF GQNAELAALA
AHLSNDDIDR LRRGGHDVRK LHAAYEKASK HSGQPTVILA KTMKGFGMGA IGQGRMTTHQ
QKKLDIDQLK AFRDRFRLPL SDDDVEQLKF YKPDDSSAVM QYLHARRAAL GGYLPRRRTS
ASHAPAVPAM SSWGRFALDT NDKEMSTTMA FVRMLGNLLK DAELGPRVVP VVADEARTFG
MANLFRQVGI YSPLGQLYEP EDMGSMLYYR EDTGGQILEE GISEAGAVSS WIAAATSYSV
HDLTMLPFYI YYSMFGFQRI GDLIWAAADQ RARGFLIGAT AGKTTLGGEG LQHQDGTSHL
AASTIPNCRA YDPAFAYEVA MIVDEGMQEM ITRQRDVFYY MTVTNENYAQ RSLTEADVDR
VRRGVLKGMY VLEPAQVEIA QVQLLGSGAI LGEVQAAARM LKDDWNIDAA VWSVTSFTEL
HRDGVSAERA QRLVERGETA VPYVTAALGA ARGPVIAATD YVRAVPELIR AYVPSRYVVL
GTDGFGRSDT RAALRAFFEV DRASIVIAAL KALVDEGQQD PDIVRQAIDR YGRIGSGLIE
PWLV