Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_6498 |
Symbol | |
ID | 4315402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | - |
Start bp | 1178064 |
End bp | 1179236 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638154342 |
Product | porin |
Protein accession | YP_778376 |
Protein GI | 115361239 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0845493 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCA AAAAAATCGA AATCATTGTC GGCTCGCTCG TGGGGTTGGC CAGTTCCGTC GCGCATAGCC AAAGCAGCGT CACGCTCTAT GGCGAGATCG ACAACGGTAT TCATTACCAG ACCAACGTAG GCGGCGGCAA AGCCGTCTAC ATGGACTCGC TGAACGGTAT CGACGGCAGT CGCTGGGGGC TGACCGGCAA GGAAGATCTG GGAGGCGGTC TCAAGGCGAT TTTTACGCTC GAGTCCGGCA TCAACGTGAA TAACGGACAA CTTGCCCAGG GCGGCACGGC GTTCGGCCGG CAAGCTTTCG TCGGACTGAG CAGCGACGCT TACGGTTCTC TCACCGTCGG CCGTCAATAC GACATGGTGT GGTATTTCCC CGAGTTTCTT GCCGGTGCCG CGGCGGTTGG CGACCTGGCG AGCGCGCATC CGGGAGATTT CGACAACACC AGTAACAGCG TGCGATTCAA CAACTCGGTG CGCTACATGA GCCCGGACTT CCACGGCTTC TCCTTTGGCG TCGAATATAG CCTCGGCGGC GTGCCCGGCG ACTTCACTTC GACGTCGGGC TATTCGCTTG GAGTCGGCTA CACACATGGT CCGCTTCAGA TCGGCGCGGC GTTCGATTAC TTCAAACACC CGACATCGAC ACCAGGTAAC GGATGGTTCA CCAACTATGC AAGCGGCTTC AATCTGCTGG CCTCTTCCCT GAACTCGGCT TATCAGGTCG CGCAAGCCTA TCAGGACGCC GTCATCGCGG CGGCCTACAC GATCGGAAAC GCGACGATCA GCGCGTCGTA TTCGAATGTT CAATACGCCA ATCTCGGTGC GTCGTTCCAG AACGGTACGG CCATCTTCAA CAACTATGAC ATCGGTTTGA ACTACCGTGT CACGCCGGCC TTTTTCGTCG GCGTCGCGTA TGACTACATG AAAGCGCGCA GCGTCACGAC GGCACAAGGC AATTCCGTCG GCAATCAGCA CTACAGTCAG GTGGCGTTCA CGCTGGACTA TCTGCTGTCG AAGCGTACCG ACGTGTACTT CTCGGGCGGC TGGCAACGCG CTTCCGGCAC ATCGTCGACG GGCGCGCCGG CGGTCGCCAA CATCGGCGGA TCCGGAGATT CATCGAATAA CCACCAGATG GTTTATCGGC TCGCTATACG ACACAAATTC TGA
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Protein sequence | MKTKKIEIIV GSLVGLASSV AHSQSSVTLY GEIDNGIHYQ TNVGGGKAVY MDSLNGIDGS RWGLTGKEDL GGGLKAIFTL ESGINVNNGQ LAQGGTAFGR QAFVGLSSDA YGSLTVGRQY DMVWYFPEFL AGAAAVGDLA SAHPGDFDNT SNSVRFNNSV RYMSPDFHGF SFGVEYSLGG VPGDFTSTSG YSLGVGYTHG PLQIGAAFDY FKHPTSTPGN GWFTNYASGF NLLASSLNSA YQVAQAYQDA VIAAAYTIGN ATISASYSNV QYANLGASFQ NGTAIFNNYD IGLNYRVTPA FFVGVAYDYM KARSVTTAQG NSVGNQHYSQ VAFTLDYLLS KRTDVYFSGG WQRASGTSST GAPAVANIGG SGDSSNNHQM VYRLAIRHKF
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